* using log directory 'd:/RCompile/CRANincoming/R-devel/marginme.Rcheck' * using R Under development (unstable) (2025-07-22 r88445 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'marginme/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'marginme' version '0.1.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Sam Watson ' New submission The Description field should not start with the package name, 'This package' or similar. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'marginme' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [12s] NOTE confint.margin: no visible binding for global variable 'df' confint.margin: no visible binding for global variable 'x' Undefined global functions or variables: df x Consider adding importFrom("stats", "df") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... ERROR Running examples in 'marginme-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: confint.margin > ### Title: Confidence interval for marginal effect > ### Aliases: confint.margin > > ### ** Examples > > ## fit a model using glmmTMB > fit <- glmmTMB::glmmTMB(y ~ Treatment + x1 + x2 + x3 + x4 + (1|Cluster), + data = trial_data, family = binomial(link="logit"),REML = TRUE) > ## relative risk, average over random effects and fixed effects > m1 <- margin(fit, + x = "Treatment", + type = "ratio", + average = c("x1","x2","x3","x4"), + re = "average", + se="GLS") > confint(m1) Error in confint.margin(m1) : object 'x' not found Calls: confint -> confint.margin Execution halted * checking PDF version of manual ... [13s] OK * checking HTML version of manual ... OK * DONE Status: 1 ERROR, 2 NOTEs