* using log directory ‘/srv/hornik/tmp/CRAN_pretest/marginme.Rcheck’
* using R Under development (unstable) (2025-07-22 r88445)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (3)
    Debian flang-new version 19.1.7 (3)
* running under: Debian GNU/Linux 13 (trixie)
* using session charset: UTF-8
* checking for file ‘marginme/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘marginme’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘Sam Watson <S.I.Watson@bham.ac.uk>’

New submission

The Description field should not start with the package name,
  'This package' or similar.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘marginme’ can be installed ... [11s/11s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [3s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [3s/2s] OK
* checking whether the package can be unloaded cleanly ... [3s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [3s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [3s/2s] OK
* checking loading without being on the library search path ... [4s/4s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s/10s] NOTE
confint.margin: no visible binding for global variable ‘df’
confint.margin: no visible binding for global variable ‘x’
Undefined global functions or variables:
  df x
Consider adding
  importFrom("stats", "df")
to your NAMESPACE file.
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [5s/5s] ERROR
Running examples in ‘marginme-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: confint.margin
> ### Title: Confidence interval for marginal effect
> ### Aliases: confint.margin
> 
> ### ** Examples
> 
> ## fit a model using glmmTMB
> fit <- glmmTMB::glmmTMB(y ~ Treatment + x1 + x2 + x3 + x4 + (1|Cluster),
+   data = trial_data, family = binomial(link="logit"),REML = TRUE)
> ## relative risk, average over random effects and fixed effects
> m1 <- margin(fit,
+        x = "Treatment",
+        type = "ratio",
+        average = c("x1","x2","x3","x4"),
+        re = "average",
+        se="GLS")
> confint(m1)
Error in confint.margin(m1) : object 'x' not found
Calls: confint -> confint.margin
Execution halted
* checking PDF version of manual ... [2s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 2 NOTEs