* using log directory ‘/srv/hornik/tmp/CRAN_pretest/marcox.Rcheck’ * using R Under development (unstable) (2025-03-10 r87922) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (1+b1) Debian flang-new version 19.1.7 (1+b1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘marcox/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘marcox’ version ‘1.0.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Junyi Chen <2655088079@qq.com>’ New submission Possibly misspelled words in DESCRIPTION: biostatistics (11:322) The Description field should not start with the package name, 'This package' or similar. * checking package namespace information ... OK * checking package dependencies ... INFO Package in Depends/Imports which should probably only be in LinkingTo: ‘RcppEigen’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘marcox’ can be installed ... [35s/35s] OK * used C++ compiler: ‘Debian clang version 19.1.7 (1+b1)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... NOTE Maintainer field differs from that derived from Authors@R Maintainer: ‘Junyi Chen <2655088079@qq.com>’ Authors@R: ‘Shida Li <3039371588@qq.com>’ * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: ‘Matrix’ ‘survival’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s/3s] NOTE factormar: no visible binding for '<<-' assignment to ‘cluster2’ factormar: no visible binding for '<<-' assignment to ‘lp’ factormar: no visible binding for '<<-' assignment to ‘lp_or’ factormar: no visible binding for '<<-' assignment to ‘dv_0’ factormar: no visible binding for '<<-' assignment to ‘dv_1’ factormar: no visible binding for '<<-' assignment to ‘dv’ gendat: no visible binding for '<<-' assignment to ‘datasets’ gendat: no visible global function definition for ‘runif’ gendat: no visible global function definition for ‘rbinom’ gendat: no visible global function definition for ‘rnorm’ gendat: no visible binding for '<<-' assignment to ‘cr’ gendat: no visible global function definition for ‘uniroot’ gendat: no visible binding for global variable ‘cr’ gendat: no visible binding for global variable ‘datasets’ gendat: no visible binding for '<<-' assignment to ‘result_dde’ gendat: no visible binding for global variable ‘result_dde’ init: no visible global function definition for ‘read.table’ init: no visible binding for global variable ‘csvortxt’ init: no visible binding for '<<-' assignment to ‘id’ init: no visible binding for '<<-' assignment to ‘l’ init: no visible binding for '<<-' assignment to ‘col_n’ init: no visible binding for '<<-' assignment to ‘col_num’ init: no visible binding for '<<-' assignment to ‘cluster2_backup’ init: no visible binding for '<<-' assignment to ‘uid’ init: no visible binding for '<<-' assignment to ‘newid’ init: no visible binding for global variable ‘uid’ init: no visible binding for '<<-' assignment to ‘K’ init: no visible binding for '<<-' assignment to ‘Kn’ marcox: no visible binding for '<<-' assignment to ‘cluster2’ marcox: no visible binding for '<<-' assignment to ‘new_id’ marcox: no visible binding for '<<-' assignment to ‘id’ marcox: no visible binding for '<<-' assignment to ‘new_uid’ marcox: no visible binding for '<<-' assignment to ‘n’ marcox: no visible binding for '<<-' assignment to ‘betainit’ marcox: no visible binding for '<<-' assignment to ‘mu’ marcox: no visible binding for '<<-' assignment to ‘rho’ marcox: no visible binding for '<<-' assignment to ‘pphi’ marcox: no visible binding for '<<-' assignment to ‘K’ marcox: no visible binding for '<<-' assignment to ‘sandv’ marcox: no visible global function definition for ‘pnorm’ marcox: no visible binding for '<<-' assignment to ‘result’ marcox: no visible binding for global variable ‘result’ Undefined global functions or variables: cr csvortxt datasets pnorm rbinom read.table result result_dde rnorm runif uid uniroot Consider adding importFrom("stats", "pnorm", "rbinom", "rnorm", "runif", "uniroot") importFrom("utils", "read.table") to your NAMESPACE file. * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... NOTE src/Makevars.win: SHLIB_OPENMP_CXXFLAGS is included in PKG_CXXFLAGS but no OPENMP macro in PKG_LIBS Use of these macros is discussed in sect 1.2.1.1 of ‘Writing R Extensions’. The macros for different languages may differ so the matching macro must be used in PKG_CXXFLAGS (etc) and match that used in PKG_LIBS (except for Fortran: see the manual). Using a SHLIB_OPENMP_ macro for compilation but none in PKG_LIBS is not portable and may result in installation errors. * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... [2s/2s] OK * checking PDF version of manual ... [2s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 5 NOTEs