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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(mapi) > > test_check("mapi") Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Estimated halfwidth: 286.835888 Estimated halfwidth: 143.417944 Linking to GEOS 3.13.1, GDAL 3.11.0, PROJ 9.6.0; sf_use_s2() is TRUE Building local cartesian grid... ... 1071 cells Building worldwide lat/lon grid... Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084 ... 2432 cells Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 2.020, system: 0.110, elapsed: 2.110 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 12.120, system: 0.140, elapsed: 12.260 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.280, system: 0.000, elapsed: 0.280 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 5.700, system: 0.610, elapsed: 6.250 seconds] Computing values for grid cells... ... done. [user: 0.110, system: 0.000, elapsed: 0.110 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 21.080, system: 0.890, elapsed: 21.890 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 2.010, system: 0.010, elapsed: 2.030 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 11.940, system: 0.010, elapsed: 11.950 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.220, system: 0.020, elapsed: 0.240 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 6.030, system: 0.610, elapsed: 6.740 seconds] Computing values for grid cells... ... done. [user: 0.170, system: 0.000, elapsed: 0.170 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 21.080, system: 0.690, elapsed: 21.860 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 2.200, system: 0.060, elapsed: 2.250 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 12.820, system: 0.030, elapsed: 12.860 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.270, system: 0.020, elapsed: 0.290 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 5.770, system: 0.580, elapsed: 6.330 seconds] Computing values for grid cells... ... done. [user: 0.210, system: 0.020, elapsed: 0.220 seconds] Starting 4 permutations... ... parallelized over 2 cores ... ... computing probabilities from permuted values ... ... done. [user: 0.500, system: 0.140, elapsed: 1.640 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 22.630, system: 0.940, elapsed: 24.530 seconds] Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.940, system: 0.110, elapsed: 2.050 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 11.870, system: 0.030, elapsed: 11.920 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.300, system: 0.010, elapsed: 0.310 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 5.780, system: 0.600, elapsed: 6.370 seconds] Computing values for grid cells... ... done. [user: 0.190, system: 0.020, elapsed: 0.210 seconds] Starting 50 permutations... ... serially ... | | | 0% | |== | 2% | |=== | 4% | |===== | 6% | |====== | 8% | |======== | 10% | |========== | 12% | |=========== | 14% | |============= | 16% | |============== | 18% | |================ | 20% | |================== | 22% | |=================== | 24% | |===================== | 26% | |====================== | 28% | |======================== | 30% | |========================== | 32% | |=========================== | 34% | |============================= | 36% | |============================== | 38% | |================================ | 40% | |================================== | 42% | |=================================== | 44% | |===================================== | 46% | |====================================== | 48% | |======================================== | 50% | |========================================== | 52% | |=========================================== | 54% | |============================================= | 56% | |============================================== | 58% | |================================================ | 60% | |================================================== | 62% | |=================================================== | 64% | |===================================================== | 66% | |====================================================== | 68% | |======================================================== | 70% | |========================================================== | 72% | |=========================================================== | 74% | |============================================================= | 76% | |============================================================== | 78% | |================================================================ | 80% | |================================================================== | 82% | |=================================================================== | 84% | |===================================================================== | 86% | |====================================================================== | 88% | |======================================================================== | 90% | |========================================================================== | 92% | |=========================================================================== | 94% | |============================================================================= | 96% | |============================================================================== | 98% | |================================================================================| 100% ... computing probabilities from permuted values ... ... done. [user: 10.890, system: 0.560, elapsed: 11.290 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 32.000, system: 1.360, elapsed: 33.220 seconds] Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ... ... 1 upper-tail and 3 lower-tail significant areas returned Building local cartesian grid... ... 1045 cells [ FAIL 0 | WARN 0 | SKIP 0 | PASS 20 ] > > proc.time() user system elapsed 102.48 4.82 108.15