downloading reverse dependencies ...
downloading Rdimtools_1.1.3.tar.gz ... ok
downloading Riemann_0.1.4.tar.gz ... ok
downloading T4cluster_0.1.4.tar.gz ... ok
downloading TDAkit_0.1.3.tar.gz ... ok

installing dependencies ‘ADMM’, ‘maotai’, ‘mclustcomp’, ‘Rdimtools’,
  ‘RiemBase’, ‘rstiefel’, ‘T4cluster’, ‘TDAstats’

begin installing package ‘maotai’
begin installing package ‘ADMM’
begin installing package ‘mclustcomp’
begin installing package ‘RiemBase’
begin installing package ‘rstiefel’
begin installing package ‘TDAstats’
* installing *source* package ‘rstiefel’ ...
** this is package ‘rstiefel’ version ‘1.0.1’
** package ‘rstiefel’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp1uHnUt/R.INSTALL113b6917469359/rstiefel/src'
gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c rstiefel.c -o rstiefel.o
rstiefel.c: In function ‘rtheta_bmf’:
rstiefel.c:69:10: warning: ‘th’ may be used uninitialized [-Wmaybe-uninitialized]
   69 |   return th;
      |          ^~
rstiefel.c:44:10: note: ‘th’ was declared here
   44 |   double th;
      |          ^~
rstiefel.c: In function ‘rtheta_bing’:
rstiefel.c:136:10: warning: ‘th’ may be used uninitialized [-Wmaybe-uninitialized]
  136 |   return th;
      |          ^~
rstiefel.c:119:10: note: ‘th’ was declared here
  119 |   double th;
      |          ^~
gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o rstiefel.so rstiefel.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp1uHnUt/R.INSTALL113b6917469359/rstiefel/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rstiefel/00new/rstiefel/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rstiefel)
* installing *source* package ‘TDAstats’ ...
** this is package ‘TDAstats’ version ‘0.4.1’
** package ‘TDAstats’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
using C++11
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpsTuXXZ/R.INSTALL113b6b5d9444c4/TDAstats/src'
g++-15 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ripser_short.cpp -o ripser_short.o
ripser_short.cpp: In function ‘bool is_prime(coefficient_t_ripser)’:
ripser_short.cpp:50:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   50 |   for (coefficient_t_ripser p = 3, q = n / p, r = n % p; p <= q; p += 2, q = n / p, r = n % p)
      |   ^~~
ripser_short.cpp:52:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
   52 |     return true;
      |     ^~~~~~
ripser_short.cpp: In member function ‘value_t_ripser rips_filtration_comparator<DistanceMatrix>::diameter(index_t_ripser) const’:
ripser_short.cpp:165:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  165 |     for (index_t_ripser i = 0; i <= dim; ++i)
      |     ^~~
ripser_short.cpp:167:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  167 |       return diam;
      |       ^~~~~~
ripser_short.cpp: In member function ‘void compressed_distance_matrix<Layout>::init_rows() [with compressed_matrix_layout Layout = LOWER_TRIANGULAR]’:
ripser_short.cpp:255:32: warning: comparison of integer expressions of different signedness: ‘index_t_ripser’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |   for (index_t_ripser i = 1; i < size(); ++i) {
      |                              ~~^~~~~~~~
ripser_short.cpp: In member function ‘void compressed_distance_matrix<Layout>::init_rows() [with compressed_matrix_layout Layout = UPPER_TRIANGULAR]’:
ripser_short.cpp:263:32: warning: comparison of integer expressions of different signedness: ‘index_t_ripser’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  263 |   for (index_t_ripser i = 0; i < size() - 1; ++i) {
      |                              ~~^~~~~~~~~~~~
ripser_short.cpp: In function ‘compressed_lower_distance_matrix getLowerDistMatrix(Rcpp::NumericMatrix)’:
ripser_short.cpp:557:17: warning: unused variable ‘numCols’ [-Wunused-variable]
  557 |                 numCols = inputMat.ncol();
      |                 ^~~~~~~
ripser_short.cpp: In function ‘Rcpp::NumericVector ripser_cpp(Rcpp::NumericMatrix, int, float, int)’:
ripser_short.cpp:671:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  671 |   for (int i = 0; i < pers_hom.size(); i++)
      |                   ~~^~~~~~~~~~~~~~~~~
ripser_short.cpp:671:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  671 |   for (int i = 0; i < pers_hom.size(); i++)
      |   ^~~
ripser_short.cpp:677:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  677 |     return ans;
      |     ^~~~~~
ripser_short.cpp: In instantiation of ‘void compute_pairs(std::vector<diameter_index_t>&, hash_map<long int, long int>&, index_t_ripser, index_t_ripser, value_t_ripser, coefficient_t_ripser, const std::vector<short int>&, const DistanceMatrix&, const ComparatorCofaces&, const Comparator&, const binomial_coeff_table&, std::vector<std::vector<double> >&) [with DistanceMatrix = compressed_distance_matrix<LOWER_TRIANGULAR>; ComparatorCofaces = rips_filtration_comparator<compressed_distance_matrix<LOWER_TRIANGULAR> >; Comparator = rips_filtration_comparator<compressed_distance_matrix<LOWER_TRIANGULAR> >; index_t_ripser = long int; value_t_ripser = double; coefficient_t_ripser = short int]’:
ripser_short.cpp:661:18:   required from here
  661 |     compute_pairs(columns_to_reduce, pivot_column_index, dim, n, threshold, modulus, multiplicative_inverse, dist,
      |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  662 |                   comp, comp_prev, binomial_coeff, pers_hom);
      |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ripser_short.cpp:436:32: warning: comparison of integer expressions of different signedness: ‘index_t_ripser’ {aka ‘long int’} and ‘std::vector<diameter_index_t>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  436 |   for (index_t_ripser i = 0; i < columns_to_reduce.size(); ++i) {
      |                              ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
g++-15 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o TDAstats.so RcppExports.o ripser_short.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpsTuXXZ/R.INSTALL113b6b5d9444c4/TDAstats/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-TDAstats/00new/TDAstats/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TDAstats)
* installing *source* package ‘mclustcomp’ ...
** this is package ‘mclustcomp’ version ‘0.3.5’
** package ‘mclustcomp’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWgGpjP/R.INSTALL113b6531668a28/mclustcomp/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c auxiliary.cpp -o auxiliary.o
auxiliary.cpp: In function ‘Rcpp::List getprobs(Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::NumericVector, int, double)’:
auxiliary.cpp:124:10: warning: unused variable ‘maxthr’ [-Wunused-variable]
  124 |   double maxthr = max(altthr);
      |          ^~~~~~
auxiliary.cpp:125:7: warning: unused variable ‘warningint’ [-Wunused-variable]
  125 |   int warningint = 0; // 1<-Px, 2<-Py, 3<-Pxy
      |       ^~~~~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c auxiliary_arma.cpp -o auxiliary_arma.o
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o mclustcomp.so RcppExports.o auxiliary.o auxiliary_arma.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWgGpjP/R.INSTALL113b6531668a28/mclustcomp/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mclustcomp/00new/mclustcomp/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mclustcomp)
* installing *source* package ‘RiemBase’ ...
** this is package ‘RiemBase’ version ‘0.2.6’
** package ‘RiemBase’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp99zump/R.INSTALL113b6253932a76/RiemBase/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c engines.cpp -o engines.o
In file included from ../inst/include/riemfactory.hpp:11,
                 from engines.cpp:2:
../inst/include/manifolds/riem_04stiefel.h: In function ‘arma::mat stiefel_exp(arma::mat, arma::mat, double)’:
../inst/include/manifolds/riem_04stiefel.h:88:13: warning: unused variable ‘n’ [-Wunused-variable]
   88 |   const int n = x.n_rows;
      |             ^
../inst/include/manifolds/riem_04stiefel.h: In function ‘arma::mat stiefel_log(arma::mat, arma::mat)’:
../inst/include/manifolds/riem_04stiefel.h:108:13: warning: unused variable ‘n’ [-Wunused-variable]
  108 |   const int n = U0.n_rows;
      |             ^
../inst/include/manifolds/riem_04stiefel.h: In function ‘arma::mat stiefel_invretr(arma::mat, arma::mat)’:
../inst/include/manifolds/riem_04stiefel.h:168:7: warning: unused variable ‘n’ [-Wunused-variable]
  168 |   int n = x.n_rows;
      |       ^
In file included from ../inst/include/riemfactory.hpp:12:
../inst/include/manifolds/riem_05grassmann.h: In function ‘double grassmann_dist(arma::mat, arma::mat)’:
../inst/include/manifolds/riem_05grassmann.h:34:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   34 |   for (int i=0;i<s.n_elem;i++){
      |                ~^~~~~~~~~
../inst/include/manifolds/riem_05grassmann.h:42:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   42 |   for (int i=0;i<s.n_elem;i++){
      |                ~^~~~~~~~~
../inst/include/manifolds/riem_05grassmann.h: In function ‘arma::mat grassmann_exp(arma::mat, arma::mat, double)’:
../inst/include/manifolds/riem_05grassmann.h:107:13: warning: unused variable ‘n’ [-Wunused-variable]
  107 |   const int n = x.n_rows;
      |             ^
../inst/include/manifolds/riem_05grassmann.h:108:13: warning: unused variable ‘p’ [-Wunused-variable]
  108 |   const int p = x.n_cols;
      |             ^
../inst/include/manifolds/riem_05grassmann.h: In function ‘arma::mat grassmann_log(arma::mat, arma::mat)’:
../inst/include/manifolds/riem_05grassmann.h:125:7: warning: unused variable ‘n’ [-Wunused-variable]
  125 |   int n = x.n_rows;
      |       ^
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o RiemBase.so RcppExports.o engines.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp99zump/R.INSTALL113b6253932a76/RiemBase/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RiemBase/00new/RiemBase/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RiemBase)
* installing *source* package ‘ADMM’ ...
** this is package ‘ADMM’ version ‘0.3.4’
** package ‘ADMM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpjBYzY6/R.INSTALL113b671e185e8f/ADMM/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c src_auxiliary.cpp -o src_auxiliary.o
src_auxiliary.cpp: In function ‘arma::cube multipleinversion(arma::mat, double, arma::mat, arma::mat, arma::vec)’:
src_auxiliary.cpp:16:13: warning: unused variable ‘n’ [-Wunused-variable]
   16 |   const int n = A.n_rows;
      |             ^
src_auxiliary.cpp:18:13: warning: unused variable ‘d1’ [-Wunused-variable]
   18 |   const int d1 = R.n_rows;
      |             ^~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c src_gathered.cpp -o src_gathered.o
src_gathered.cpp: In function ‘Rcpp::List admm_bp(const arma::mat&, const arma::colvec&, arma::colvec&, double, double, int, double, double)’:
src_gathered.cpp:137:13: warning: unused variable ‘m’ [-Wunused-variable]
  137 |   const int m = A.n_rows;
      |             ^
src_gathered.cpp: In function ‘arma::mat enet_factor(arma::mat, double)’:
src_gathered.cpp:226:13: warning: unused variable ‘m’ [-Wunused-variable]
  226 |   const int m = A.n_rows;
      |             ^
src_gathered.cpp: In function ‘Rcpp::List admm_enet(const arma::mat&, const arma::colvec&, double, double, double, double, int, double)’:
src_gathered.cpp:236:13: warning: unused variable ‘m’ [-Wunused-variable]
  236 |   const int m = A.n_rows;
      |             ^
src_gathered.cpp: In function ‘arma::mat genlasso_factor(const arma::mat&, double, const arma::mat&)’:
src_gathered.cpp:326:13: warning: unused variable ‘m’ [-Wunused-variable]
  326 |   const int m = A.n_rows;
      |             ^
src_gathered.cpp:327:13: warning: unused variable ‘n’ [-Wunused-variable]
  327 |   const int n = A.n_cols;
      |             ^
src_gathered.cpp: In function ‘Rcpp::List admm_genlasso(const arma::mat&, const arma::colvec&, const arma::mat&, double, double, double, int, double)’:
src_gathered.cpp:335:13: warning: unused variable ‘m’ [-Wunused-variable]
  335 |   const int m = A.n_rows;
      |             ^
src_gathered.cpp: In function ‘Rcpp::List admm_sdp(arma::mat&, arma::field<arma::Mat<double> >&, arma::vec, double, double, double, int, double, bool)’:
src_gathered.cpp:929:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  929 |   for (int i=0;i<m;i++){
      |                ~^~
src_gathered.cpp:949:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  949 |     for (int i=0;i<m;i++){
      |                  ~^~
src_gathered.cpp:959:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  959 |     for (int i=0;i<m;i++){
      |                  ~^~
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o ADMM.so RcppExports.o src_auxiliary.o src_gathered.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpjBYzY6/R.INSTALL113b671e185e8f/ADMM/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ADMM/00new/ADMM/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ADMM)
* installing *source* package ‘maotai’ ...
** this is package ‘maotai’ version ‘0.2.7’
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptSHIyc/R.INSTALL113b6025f2fb73/maotai/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cpp_WLvMF.cpp -o cpp_WLvMF.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cpp_bmds.cpp -o cpp_bmds.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cpp_casket.cpp -o cpp_casket.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cpp_ecdf.cpp -o cpp_ecdf.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cpp_ecdf_sample_regular.cpp -o cpp_ecdf_sample_regular.o
cpp_ecdf_sample_regular.cpp: In function ‘double lp_ecdf_distance(const arma::vec&, const arma::vec&, double)’:
cpp_ecdf_sample_regular.cpp:47:10: warning: variable ‘prev_knot’ set but not used [-Wunused-but-set-variable]
   47 |   double prev_knot = next_knot;
      |          ^~~~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cpp_ecdf_sample_wasserstein.cpp -o cpp_ecdf_sample_wasserstein.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cpp_mmds.cpp -o cpp_mmds.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cpp_smacof.cpp -o cpp_smacof.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c evaluations.cpp -o evaluations.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c src_computations.cpp -o src_computations.o
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o maotai.so RcppExports.o cpp_WLvMF.o cpp_bmds.o cpp_casket.o cpp_ecdf.o cpp_ecdf_sample_regular.o cpp_ecdf_sample_wasserstein.o cpp_mmds.o cpp_smacof.o evaluations.o src_computations.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmptSHIyc/R.INSTALL113b6025f2fb73/maotai/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-maotai/00new/maotai/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maotai)
begin installing package ‘Rdimtools’
* installing *source* package ‘Rdimtools’ ...
** this is package ‘Rdimtools’ version ‘1.1.3’
** package ‘Rdimtools’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphTvkgU/R.INSTALL113f1b5dd86377/Rdimtools/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Rdimtools_auxiliary.cpp -o Rdimtools_auxiliary.o
Rdimtools_auxiliary.cpp: In function ‘Rcpp::List single_bicgstab(const arma::mat&, const arma::colvec&, arma::colvec&, double, int, const arma::mat&)’:
Rdimtools_auxiliary.cpp:652:10: warning: variable ‘resid’ set but not used [-Wunused-but-set-variable]
  652 |   double resid = 0;
      |          ^~~~~
Rdimtools_auxiliary.cpp: In function ‘Rcpp::List single_bicgstab_sparse(arma::sp_mat, arma::sp_mat, arma::colvec&, double, int, arma::sp_mat)’:
Rdimtools_auxiliary.cpp:769:10: warning: variable ‘resid’ set but not used [-Wunused-but-set-variable]
  769 |   double resid = 0;
      |          ^~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c example_class.cpp -o example_class.o
example_class.cpp: In member function ‘arma::mat ClNLproc::MainFunc(arma::mat&)’:
example_class.cpp:31:9: warning: unused variable ‘N’ [-Wunused-variable]
   31 |     int N = X.n_rows;
      |         ^
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c methods_estimation.cpp -o methods_estimation.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c methods_handytools.cpp -o methods_handytools.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c methods_linear.cpp -o methods_linear.o
methods_linear.cpp: In function ‘arma::vec method_spufs(arma::mat&, arma::mat, double, double, double)’:
methods_linear.cpp:780:13: warning: unused variable ‘n’ [-Wunused-variable]
  780 |   const int n = X.n_rows;
      |             ^
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c methods_nonlinear.cpp -o methods_nonlinear.o
methods_nonlinear.cpp: In function ‘Rcpp::List main_bmds(arma::mat, arma::mat, double, double, double, int, double, bool, arma::vec)’:
methods_nonlinear.cpp:836:7: warning: unused variable ‘accept’ [-Wunused-variable]
  836 |   int accept = 0;
      |       ^~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ver1_computation.cpp -o ver1_computation.o
ver1_computation.cpp: In function ‘arma::mat v2aux_pca(arma::mat&, int)’:
ver1_computation.cpp:12:7: warning: unused variable ‘P’ [-Wunused-variable]
   12 |   int P = X.n_cols;
      |       ^
ver1_computation.cpp: In function ‘arma::mat v2aux_pdist(arma::mat&)’:
ver1_computation.cpp:30:7: warning: unused variable ‘P’ [-Wunused-variable]
   30 |   int P = X.n_cols;
      |       ^
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ver1_feature.cpp -o ver1_feature.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ver1_linear.cpp -o ver1_linear.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ver1_nonlinear.cpp -o ver1_nonlinear.o
ver1_nonlinear.cpp: In function ‘Rcpp::List dt_mmds(arma::mat&, int, int, double)’:
ver1_nonlinear.cpp:98:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   98 |   if ((ndim < 1)||(ndim >= X.n_cols)){
      |                    ~~~~~^~~~~~~~~~~
ver1_nonlinear.cpp:97:7: warning: unused variable ‘P’ [-Wunused-variable]
   97 |   int P = X.n_cols;
      |       ^
ver1_nonlinear.cpp: In function ‘Rcpp::List dt_rpca(arma::mat&, double, double, int, double)’:
ver1_nonlinear.cpp:394:7: warning: unused variable ‘N’ [-Wunused-variable]
  394 |   int N = X.n_rows;
      |       ^
ver1_nonlinear.cpp:395:7: warning: unused variable ‘P’ [-Wunused-variable]
  395 |   int P = X.n_cols;
      |       ^
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/tmp/CRAN_recheck/Library/maotai/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ver1_utility.cpp -o ver1_utility.o
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o Rdimtools.so RcppExports.o Rdimtools_auxiliary.o example_class.o methods_estimation.o methods_handytools.o methods_linear.o methods_nonlinear.o ver1_computation.o ver1_feature.o ver1_linear.o ver1_nonlinear.o ver1_utility.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphTvkgU/R.INSTALL113f1b5dd86377/Rdimtools/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rdimtools/00new/Rdimtools/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rdimtools)
begin installing package ‘T4cluster’
* installing *source* package ‘T4cluster’ ...
** this is package ‘T4cluster’ version ‘0.1.4’
** package ‘T4cluster’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoX7CgY/R.INSTALL1142c02efe297c/T4cluster/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c src_SOC.cpp -o src_SOC.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c src_coresets.cpp -o src_coresets.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c src_functional.cpp -o src_functional.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c src_gauss.cpp -o src_gauss.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c src_gbphate.cpp -o src_gbphate.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c src_gmm.cpp -o src_gmm.o
src_gmm.cpp: In function ‘Rcpp::List gmm_11R(arma::mat&, int, double, int, bool)’:
src_gmm.cpp:399:7: warning: variable ‘oldPar’ set but not used [-Wunused-but-set-variable]
  399 |   int oldPar = 0;
      |       ^~~~~~
src_gmm.cpp: In function ‘double gmm_16Gfix_loglkd(arma::mat, arma::vec, arma::mat, arma::cube, arma::vec)’:
src_gmm.cpp:551:7: warning: unused variable ‘p’ [-Wunused-variable]
  551 |   int p = X.n_cols;
      |       ^
src_gmm.cpp: In function ‘arma::vec gmm_density(arma::mat&, arma::vec&, arma::mat&, arma::cube&)’:
src_gmm.cpp:698:7: warning: unused variable ‘p’ [-Wunused-variable]
  698 |   int p = coords.n_cols;
      |       ^
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c src_kmeans.cpp -o src_kmeans.o
src_kmeans.cpp: In function ‘Rcpp::List arma_kmeans_kmeanspp(arma::mat&, arma::mat&, int, int)’:
src_kmeans.cpp:26:7: warning: unused variable ‘N’ [-Wunused-variable]
   26 |   int N = X.n_cols;
      |       ^
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c src_quality.cpp -o src_quality.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c src_spectral.cpp -o src_spectral.o
src_spectral.cpp: In function ‘Rcpp::List cpp_scNJW(arma::mat&, int, double, bool, int)’:
src_spectral.cpp:61:7: warning: unused variable ‘N’ [-Wunused-variable]
   61 |   int N = D.n_rows;
      |       ^
src_spectral.cpp: In function ‘Rcpp::List cpp_scSM(arma::mat&, int, double, bool, int)’:
src_spectral.cpp:75:7: warning: unused variable ‘N’ [-Wunused-variable]
   75 |   int N = D.n_rows;
      |       ^
src_spectral.cpp: In function ‘Rcpp::List cpp_scUL(arma::mat&, int, double, bool, int)’:
src_spectral.cpp:89:7: warning: unused variable ‘N’ [-Wunused-variable]
   89 |   int N = D.n_rows;
      |       ^
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c src_sphere.cpp -o src_sphere.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c src_subspace.cpp -o src_subspace.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c utilities.cpp -o utilities.o
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o T4cluster.so RcppExports.o src_SOC.o src_coresets.o src_functional.o src_gauss.o src_gbphate.o src_gmm.o src_kmeans.o src_quality.o src_spectral.o src_sphere.o src_subspace.o utilities.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoX7CgY/R.INSTALL1142c02efe297c/T4cluster/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-T4cluster/00new/T4cluster/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (T4cluster)

checking maotai_0.2.7.tar.gz ...
checking Rdimtools_1.1.3.tar.gz ...
checking Riemann_0.1.4.tar.gz ...
checking T4cluster_0.1.4.tar.gz ...
checking TDAkit_0.1.3.tar.gz ...

Depends:
Package: maotai
  Imports: Matrix, Rcpp, Rdpack, RSpectra, Rtsne, RANN, cluster,
    labdsv, shapes, stats, utils, fastcluster, dbscan, pracma, gsignal
  LinkingTo: Rcpp, RcppArmadillo, RcppDist

Timings:
         user system elapsed
maotai 116.14  9.389 127.609

Results:
Check status summary:
                  WARNING OK
  Source packages       0  1
  Reverse depends       1  3

Check results summary:
maotai ... OK
rdepends_Rdimtools ... OK
rdepends_Riemann ... WARNING
* checking whether package ‘Riemann’ can be installed ... [125s/126s] WARNING
* checking C++ specification ... NOTE
* checking Rd files ... [4s/4s] NOTE
rdepends_T4cluster ... OK
rdepends_TDAkit ... OK