Package: autograph
Check: examples
New result: ERROR
  Running examples in ‘autograph-Ex.R’ failed
  The error most likely occurred in:
  
  > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
  > ### Name: layout_valence
  > ### Title: Valence-based layout
  > ### Aliases: layout_valence layout_tbl_graph_valence
  > 
  > ### ** Examples
  > 
  > edges <- data.frame(
  +   from = c("A", "B", "C", "D"),
  +   to   = c("B", "C", "D", "A"),
  +   weight = c(2, 3, 1, 4),
  +   sign = c(1, -1, 1, -1)  # 1 = positive, -1 = negative
  +   )
  > graphr(as_igraph(edges), layout="valence")
  ℹ `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
  Install netrics with: `install.packages('netrics')`
  Error: Please update your code to use the new function.
  Execution halted

Package: autograph
Check: tests
New result: ERROR
    Running ‘testthat.R’ [13s/8s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > library(testthat)
    > library(autograph)
    Loading required package: manynet
    > 
    > stocnet_theme("default")
    > test_check("autograph")
    Starting 2 test processes.
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    > test-graphr.R: i `node_is_isolate()` was moved since manynet 2.0.0 to netrics.
    > test-graphr.R: Install netrics with: `install.packages('netrics')`
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    Saving _problems/test-graphr-8.R
    > test-plot_manynet.R: i `node_deg()` was moved since manynet 2.0.0 to netrics.
    > test-plot_manynet.R: Install netrics with: `install.packages('netrics')`
    Saving _problems/test-plot_manynet-1.R
    [ FAIL 27 | WARN 0 | SKIP 26 | PASS 34 ]
    
    ══ Skipped tests (26) ══════════════════════════════════════════════════════════
    • On CRAN (20): 'test-layout_partition.R:3:3', 'test-layout_partition.R:15:3',
      'test-layout_partition.R:24:3', 'test-layout_partition.R:54:3',
      'test-layout_partition.R:63:3', 'test-layout_partition.R:72:3',
      'test-layout_partition.R:79:3', 'test-graphr.R:14:3', 'test-graphr.R:29:3',
      'test-graphr.R:43:3', 'test-graphr.R:59:3', 'test-graphr.R:77:3',
      'test-graphr.R:101:3', 'test-graphr.R:113:3', 'test-graphr.R:123:3',
      'test-graphr.R:129:3', 'test-graphr.R:136:3', 'test-graphr.R:148:3',
      'test-graphr.R:162:3', 'test-graphr.R:171:3'
    • On Linux (2): 'test-plot_convergence.R:2:3', 'test-plot_convergence.R:8:3'
    • grepl("starwars|physicians|potter|marvel", nm) is TRUE (4):
      'test-graphr.R:7:5', 'test-graphr.R:7:5', 'test-graphr.R:7:5',
      'test-graphr.R:7:5'
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Failure ('test-graphr.R:8:5'): graphr() works on fict_actually ──────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on fict_friends ───────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on fict_greys ─────────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on fict_lotr ──────────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on fict_thrones ───────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on irps_911 ───────────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on irps_blogs ─────────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on irps_books ─────────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on irps_nuclear ───────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on irps_revere ────────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on irps_usgeo ─────────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on irps_wwi ───────────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on ison_adolescents ───────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on ison_algebra ───────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on ison_brandes ───────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on ison_dolphins ──────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on ison_emotions ──────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on ison_hightech ──────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on ison_judo_moves ────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on ison_karateka ──────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on ison_koenigsberg ───────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on ison_laterals ──────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph::graphs(...)
      9.     └─base::lapply(...)
     10.       └─autograph (local) FUN(X[[i]], ...)
     11.         └─autograph::graphr(netlist[[i]], ...)
     12.           └─autograph:::.infer_isolates(g, match.arg(isolates))
     13.             └─manynet::node_is_isolate(g)
     14.               └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on ison_lawfirm ───────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on ison_monks ─────────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on ison_networkers ────────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Failure ('test-graphr.R:8:5'): graphr() works on ison_southern_women ────────
    Expected `graphr(data_objs[[nm]])` not to throw any errors.
    Actually got a <simpleError> with message:
      Please update your code to use the new function.
    Backtrace:
         ▆
      1. ├─testthat::expect_error(graphr(data_objs[[nm]]), NA) at test-graphr.R:8:5
      2. │ └─testthat:::expect_condition_matching_(...)
      3. │   └─testthat:::quasi_capture(...)
      4. │     ├─testthat (local) .capture(...)
      5. │     │ └─base::withCallingHandlers(...)
      6. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
      7. └─autograph::graphr(data_objs[[nm]])
      8.   └─autograph:::.infer_isolates(g, match.arg(isolates))
      9.     └─manynet::node_is_isolate(g)
     10.       └─manynet:::fn_moved("node_is_isolate", "node_is_isolate", version = "2.0.0")
    ── Error ('test-plot_manynet.R:1:1'): (code run outside of `test_that()`) ──────
    Error: Please update your code to use the new function.
    Backtrace:
        ▆
     1. └─manynet::node_deg(ison_dolphins) at test-plot_manynet.R:1:1
     2.   └─manynet:::fn_moved("node_deg", "node_by_deg", version = "2.0.0")
    
    [ FAIL 27 | WARN 0 | SKIP 26 | PASS 34 ]
    Error:
    ! Test failures.
    Execution halted

Package: migraph
Check: dependencies in R code
New result: WARNING
  Missing or unexported object: ‘manynet::generate_permutation’

Package: migraph
Check: examples
New result: ERROR
  Running examples in ‘migraph-Ex.R’ failed
  The error most likely occurred in:
  
  > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
  > ### Name: predict
  > ### Title: Predict methods for network regression
  > ### Aliases: predict predict.netlm predict.netlogit
  > 
  > ### ** Examples
  > 
  > networkers <- ison_networkers %>% to_subgraph(Discipline == "Sociology")
  > model1 <- net_regression(weight ~ ego(Citations) + alter(Citations) + sim(Citations), 
  +                       networkers, times = 20)
  Error:
  ! 'generate_permutation' is not an exported object from 'namespace:manynet'
  Backtrace:
       ▆
    1. └─migraph::net_regression(...)
    2.   └─furrr::future_map_dbl(...)
    3.     └─furrr:::furrr_map_template(...)
    4.       └─furrr:::furrr_template(...)
    5.         └─furrr:::furrr_try_catch(...)
    6.           └─base::tryCatch(expr = expr, purrr_error_indexed = rethrow_purrr_error_indexed)
    7.             └─base (local) tryCatchList(expr, classes, parentenv, handlers)
    8.               └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
    9.                 └─value[[3L]](cond)
   10.                   └─rlang::cnd_signal(cnd)
  Execution halted

Package: migraph
Check: tests
New result: ERROR
    Running ‘testthat.R’ [10s/6s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > library(testthat)
    > library(manynet)
    > library(migraph)
    Loading required package: autograph
    > 
    > test_check("migraph")
    Starting 2 test processes.
    > test-measure_over.R: i `net_components()` was moved since manynet 2.0.0 to netrics.Install netrics with: `install.packages('netrics')`
    > test-measure_over.R: i `node_in_regular()` was moved since manynet 2.0.0 to netrics.
    > test-measure_over.R: Install netrics with: `install.packages('netrics')`
    Saving _problems/test-measure_over-2.R
    Saving _problems/test-measure_over-8.R
    Saving _problems/test-model_regression-6.R
    > test-model_tests.R: i `net_heterophily()` was moved since manynet 2.0.0 to netrics.
    > test-model_tests.R: Install netrics with: `install.packages('netrics')`
    Saving _problems/test-model_tests-8.R
    [ FAIL 4 | WARN 0 | SKIP 0 | PASS 1 ]
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Error ('test-measure_over.R:2:3'): over_waves works ─────────────────────────
    Error: Please update your code to use the new function.
    Backtrace:
         ▆
      1. └─migraph::over_waves(manynet::fict_potter, manynet::net_components) at test-measure_over.R:2:3
      2.   └─furrr::future_map(...)
      3.     └─furrr:::furrr_map_template(...)
      4.       └─furrr:::furrr_template(...)
      5.         └─furrr:::furrr_try_catch(...)
      6.           └─base::tryCatch(expr = expr, purrr_error_indexed = rethrow_purrr_error_indexed)
      7.             └─base (local) tryCatchList(expr, classes, parentenv, handlers)
      8.               └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
      9.                 └─value[[3L]](cond)
     10.                   └─rlang::cnd_signal(cnd)
    ── Error ('test-measure_over.R:7:3'): over_membership works ────────────────────
    Error: Please update your code to use the new function.
    Backtrace:
        ▆
     1. ├─migraph::over_membership(...) at test-measure_over.R:7:3
     2. └─manynet::node_in_regular(fict_potter)
     3.   └─manynet:::fn_moved("node_in_regular", "node_in_regular", version = "2.0.0")
    ── Error ('test-model_regression.R:5:1'): (code run outside of `test_that()`) ──
    Error: 'generate_permutation' is not an exported object from 'namespace:manynet'
    Backtrace:
         ▆
      1. └─migraph::net_regression(...) at test-model_regression.R:5:1
      2.   └─furrr::future_map_dfr(...)
      3.     └─furrr::future_map(...)
      4.       └─furrr:::furrr_map_template(...)
      5.         └─furrr:::furrr_template(...)
      6.           └─furrr:::furrr_try_catch(...)
      7.             └─base::tryCatch(expr = expr, purrr_error_indexed = rethrow_purrr_error_indexed)
      8.               └─base (local) tryCatchList(expr, classes, parentenv, handlers)
      9.                 └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
     10.                   └─value[[3L]](cond)
     11.                     └─rlang::cnd_signal(cnd)
    ── Error ('test-model_tests.R:5:1'): (code run outside of `test_that()`) ───────
    Error: Please update your code to use the new function.
    Backtrace:
        ▆
     1. └─migraph::test_random(...) at test-model_tests.R:5:1
     2.   └─manynet (local) FUN(.data, args)
     3.     └─manynet:::fn_moved("net_heterophily", "net_by_heterophily", version = "2.0.0")
    
    [ FAIL 4 | WARN 0 | SKIP 0 | PASS 1 ]
    Error:
    ! Test failures.
    Execution halted

Package: netrics
Check: Rd cross-references
New result: WARNING
  Missing link(s) in Rd file 'mark_core.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'mark_degree.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'mark_diff.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'mark_dyads.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'mark_nodes.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'mark_select_node.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'mark_select_tie.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'mark_ties.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'mark_triangles.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_assort_net.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_assort_node.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_breadth.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_broker_node.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_broker_tie.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_brokerage.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_central_between.Rd':
    ‘[manynet:manip_direction]{manynet::to_undirected()}’
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_central_close.Rd':
    ‘[manynet:manip_direction]{manynet::to_undirected()}’
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_central_degree.Rd':
    ‘[manynet:manip_direction]{manynet::to_undirected()}’
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_central_eigen.Rd':
    ‘[manynet:manip_direction]{manynet::to_undirected()}’
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_centralisation_between.Rd':
    ‘[manynet:manip_direction]{manynet::to_undirected()}’
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_centralisation_close.Rd':
    ‘[manynet:manip_direction]{manynet::to_undirected()}’
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_centralisation_degree.Rd':
    ‘[manynet:manip_direction]{manynet::to_undirected()}’
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_centralisation_eigen.Rd':
    ‘[manynet:manip_direction]{manynet::to_undirected()}’
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_centralities_between.Rd':
    ‘[manynet:manip_direction]{manynet::to_undirected()}’
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_centralities_close.Rd':
    ‘[manynet:manip_direction]{manynet::to_undirected()}’
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_centralities_degree.Rd':
    ‘[manynet:manip_direction]{manynet::to_undirected()}’
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_centralities_eigen.Rd':
    ‘[manynet:manip_direction]{manynet::to_undirected()}’
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_closure.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_closure_node.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_cohesion.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_core.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_diffusion_node.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_diverse_net.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_diverse_node.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_features.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_fragmentation.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_hierarchy.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'measure_periods.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'member_brokerage.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'member_cliques.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'member_community.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'member_community_hier.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'member_community_non.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'member_components.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'member_core.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'member_diffusion.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'member_equivalence.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'method_cluster.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'method_kselect.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'motif_brokerage_net.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'motif_brokerage_node.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'motif_exposure.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'motif_hazard.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'motif_hierarchy.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'motif_net.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'motif_node.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'motif_path.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  Missing link(s) in Rd file 'motif_periods.Rd':
    ‘[manynet:manip_as]{manynet::as_tidygraph()}’
  
  See section 'Cross-references' in the 'Writing R Extensions' manual.