* using log directory ‘/home/hornik/tmp/CRAN_special_noSuggests/manynet.Rcheck’ * using R Under development (unstable) (2024-10-04 r87206) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-14 (Debian 14.2.0-1) 14.2.0 GNU Fortran (Debian 14.2.0-1) 14.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘manynet/DESCRIPTION’ ... OK * this is package ‘manynet’ version ‘1.2.4’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [8s/10s] OK * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘manynet’ can be installed ... [11s/12s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking whether startup messages can be suppressed ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [21s/21s] OK * checking Rd files ... [1s/1s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking examples ... [3s/3s] ERROR Running examples in ‘manynet-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: make_play > ### Title: Making diffusion models on networks > ### Aliases: make_play play_diffusion play_diffusions > > ### ** Examples > > smeg <- generate_smallworld(15, 0.025) > plot(play_diffusion(smeg, recovery = 0.4)) > #graphr(play_diffusion(ison_karateka)) > plot(play_diffusions(smeg, times = 10)) Error in loadNamespace(x) : there is no package called ‘future’ Calls: plot ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [15s/8s] ERROR Running ‘testthat.R’ [15s/8s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(manynet) > > test_check("manynet") Starting 2 test processes [ FAIL 4 | WARN 0 | SKIP 21 | PASS 546 ] ══ Skipped tests (21) ══════════════════════════════════════════════════════════ • On CRAN (21): 'test-manip_as.R:86:3', 'test-manip_split.R:49:3', 'test-map_autographr.R:2:3', 'test-map_autographr.R:17:3', 'test-map_autographr.R:31:3', 'test-map_autographr.R:47:3', 'test-map_autographr.R:65:3', 'test-map_autographr.R:90:3', 'test-map_autographr.R:102:3', 'test-map_autographr.R:111:3', 'test-map_autographr.R:117:3', 'test-map_autographr.R:124:3', 'test-map_autographr.R:137:3', 'test-map_autographr.R:154:3', 'test-map_autographr.R:167:3', 'test-map_autographr.R:176:3', 'test-mark_nodes.R:13:3', 'test-mark_nodes.R:22:3', 'test-mark_nodes.R:62:3', 'test-mark_ties.R:24:3', 'test-mark_ties.R:33:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-make_read.R:4:3'): read_edgelist works ───────────────────────── Error in `loadNamespace(x)`: there is no package called 'readxl' Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-make_read.R:4:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─manynet::read_edgelist(testthat::test_path("sheets", "test.xlsx")) 5. └─base::loadNamespace(x) 6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 7. └─base (local) withOneRestart(expr, restarts[[1L]]) 8. └─base (local) doWithOneRestart(return(expr), restart) ── Error ('test-make_read.R:43:3'): read_nodelist works ──────────────────────── Error in `loadNamespace(x)`: there is no package called 'readxl' Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-make_read.R:43:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─manynet::read_nodelist(testthat::test_path("sheets", "test.xlsx")) 5. └─base::loadNamespace(x) 6. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 7. └─base (local) withOneRestart(expr, restarts[[1L]]) 8. └─base (local) doWithOneRestart(return(expr), restart) ── Error ('test-member_equivalence.R:5:3'): equivalence clustering returns the right class ── Error in `loadNamespace(x)`: there is no package called 'sna' Backtrace: ▆ 1. ├─testthat::expect_s3_class(...) at test-member_equivalence.R:5:3 2. │ └─testthat::quasi_label(enquo(object), arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─manynet::node_in_structural(ison_adolescents, "elbow", "hier") 5. │ └─manynet::node_in_equivalence(...) 6. │ └─manynet::k_elbow(hc, .data, census, range) 7. └─base::loadNamespace(x) 8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 9. └─base (local) withOneRestart(expr, restarts[[1L]]) 10. └─base (local) doWithOneRestart(return(expr), restart) ── Error ('test-member_equivalence.R:18:3'): equivalence clustering works ────── Error in `loadNamespace(x)`: there is no package called 'sna' Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-member_equivalence.R:18:3 2. │ └─testthat::quasi_label(enquo(expected), expected.label, arg = "expected") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─manynet::node_in_regular(ison_adolescents, "elbow") 5. │ └─manynet::node_in_equivalence(...) 6. │ └─manynet::k_elbow(hc, .data, census, range) 7. └─base::loadNamespace(x) 8. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 9. └─base (local) withOneRestart(expr, restarts[[1L]]) 10. └─base (local) doWithOneRestart(return(expr), restart) [ FAIL 4 | WARN 0 | SKIP 21 | PASS 546 ] Error: Test failures Execution halted * checking PDF version of manual ... [6s/7s] OK * checking HTML version of manual ... [4s/4s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 ERRORs