* using log directory ‘/home/hornik/tmp/CRAN_special_donttest/manureshed.Rcheck’ * using R Under development (unstable) (2026-03-09 r89580) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-15 (Debian 15.2.0-14) 15.2.0 GNU Fortran (Debian 15.2.0-14) 15.2.0 * running under: Debian GNU/Linux forky/sid * using session charset: UTF-8 * current time: 2026-03-09 15:54:18 UTC * using option ‘--run-donttest’ * checking for file ‘manureshed/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘manureshed’ version ‘0.1.4’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [4s/8s] NOTE Maintainer: ‘Olatunde D. Akanbi ’ New submission Package was archived on CRAN Possibly misspelled words in DESCRIPTION: Akanbi (38:56) CASFER (45:28) Sabo (46:43) Spatiotemporal (3:8) al (38:66) et (38:63) CRAN repository db overrides: X-CRAN-Comment: Archived on 2026-03-06 as issues were not corrected in time. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘manureshed’ can be installed ... [6s/6s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking whether startup messages can be suppressed ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [11s/11s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [36s/173s] ERROR Running examples in ‘manureshed-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: compare_analyses > ### Title: Compare Two Analysis Results > ### Aliases: compare_analyses > > ### ** Examples > > ## No test: > results_2010 <- run_builtin_analysis(scale = "county", year = 2010) ====================================================================== BATCH MANURESHED ANALYSIS ====================================================================== Year: 2010 Scale: county Nutrients: nitrogen, phosphorus ---------------------------------------------------------------------- Checking data availability... Data availability confirmed Available scales:county, huc8, huc2 Available years forcounty:1987-2016 Built-in WWTP data:Available (2007-2016) Loading built-in NuGIS data... Using cached version of nugis_county_data Loaded NuGIS county data for year 2010 Number of spatial units: 3064 Loading built-in spatial boundaries... Using cached version of county_boundaries Loaded county boundaries Number of spatial units: 3112 Calculating cropland threshold... Cropland threshold:1235.53acres Processing agricultural classifications... Starting complete agricultural classification for county scale... Processed NuGIS data for county scale: Spatial units: 3064 Converted P2O5 to P using factor: 0.436 Nitrogen classification summary: Excluded: 145 units Sink_Deficit: 2362 units Sink_Fertilizer: 287 units Source: 83 units Within_County: 187 units Phosphorus classification summary: Excluded: 145 units Sink_Deficit: 1760 units Sink_Fertilizer: 469 units Source: 343 units Within_County: 347 units Agricultural classification complete! Applied threshold: 1235.53 acres Agricultural classification complete Spatial units processed:3112 Nitrogen classes:Excluded ( 193 ), Sink_Deficit ( 2362 ), Sink_Fertilizer ( 287 ), Source ( 83 ), Within_County ( 187 ) Phosphorus classes:Excluded ( 193 ), Sink_Deficit ( 1760 ), Sink_Fertilizer ( 469 ), Source ( 343 ), Within_County ( 347 ) Processing WWTP data... Nutrients:nitrogen, phosphorus WWTP year:2010 Load units:kg Data source:Built-in (2010) Loading built-in nitrogen WWTP data for2010... Using cached version of wwtp_nitrogen_combined Loaded WWTP nitrogen data for year 2010 Number of facilities: 24727 Loading built-in phosphorus WWTP data for2010... Downloading wwtp_phosphorus_combined from OSF... File ID: 689c97404cae9f37ea13c731 trying URL 'https://files.osf.io/v1/resources/g39xa/providers/osfstorage/689c97404cae9f37ea13c731' Warning in utils::download.file(url = download_url, destfile = local_file, : cannot open URL 'https://files.osf.io/v1/resources/g39xa/providers/osfstorage/689c97404cae9f37ea13c731': HTTP status was '403 Forbidden' Error in value[[3L]](cond) : Failed to download wwtp_phosphorus_combined from OSF: cannot open URL 'https://files.osf.io/v1/resources/g39xa/providers/osfstorage/689c97404cae9f37ea13c731' URL: https://files.osf.io/v1/resources/g39xa/providers/osfstorage/689c97404cae9f37ea13c731 Calls: run_builtin_analysis ... tryCatch -> tryCatchList -> tryCatchOne -> Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [1s/1s] OK Running ‘testthat.R’ [1s/1s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [11s/12s] OK * checking PDF version of manual ... [4s/4s] OK * checking HTML version of manual ... [2s/3s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE