downloading reverse dependencies ‘antaresViz’, ‘ciftiTools’, ‘leaflet.minicharts’, ‘rgl’, ‘rgl2gltf’, ‘sankeywheel’ trying URL 'file:///data/Repositories/CRAN/src/contrib/antaresViz_0.18.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ciftiTools_0.18.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/leaflet.minicharts_0.6.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rgl_1.3.31.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rgl2gltf_1.0.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/sankeywheel_0.1.0.tar.gz' installing dependencies ‘alphashape3d’, ‘antaresProcessing’, ‘antaresRead’, ‘js’, ‘leaflet.minicharts’, ‘manipulateWidget’, ‘orientlib’, ‘rAmCharts’, ‘RNifti’, ‘spMaps’, ‘xdvir’ also installing the dependencies ‘pipeR’, ‘hexView’ begin installing package ‘pipeR’ begin installing package ‘hexView’ begin installing package ‘spMaps’ begin installing package ‘antaresRead’ begin installing package ‘manipulateWidget’ begin installing package ‘leaflet.minicharts’ begin installing package ‘alphashape3d’ begin installing package ‘orientlib’ begin installing package ‘js’ begin installing package ‘RNifti’ * installing *source* package ‘pipeR’ ... ** this is package ‘pipeR’ version ‘0.6.1.3’ ** package ‘pipeR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pipeR) begin installing package ‘rAmCharts’ * installing *source* package ‘hexView’ ... ** this is package ‘hexView’ version ‘0.3-4’ ** package ‘hexView’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hexView) begin installing package ‘xdvir’ * installing *source* package ‘leaflet.minicharts’ ... ** this is package ‘leaflet.minicharts’ version ‘0.6.3’ ** package ‘leaflet.minicharts’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (leaflet.minicharts) * installing *source* package ‘js’ ... ** this is package ‘js’ version ‘1.2.1’ ** package ‘js’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (js) * installing *source* package ‘orientlib’ ... ** this is package ‘orientlib’ version ‘0.10.5’ ** package ‘orientlib’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function from function ‘rotmatrix’ in package ‘orientlib’ Creating a generic function from function ‘rotvector’ in package ‘orientlib’ Creating a generic function from function ‘eulerzyx’ in package ‘orientlib’ Creating a generic function from function ‘quaternion’ in package ‘orientlib’ Creating a generic function from function ‘skewvector’ in package ‘orientlib’ Creating a generic function from function ‘skewmatrix’ in package ‘orientlib’ Creating a generic function from function ‘eulerzxz’ in package ‘orientlib’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (orientlib) * installing *source* package ‘alphashape3d’ ... ** this is package ‘alphashape3d’ version ‘1.3.3’ ** package ‘alphashape3d’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZEwU4G/R.INSTALL256a981133f66e/alphashape3d/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c alphashape3d.c -o alphashape3d.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c insideashape.c -o insideashape.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c surfaceNormals.c -o surfaceNormals.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o alphashape3d.so alphashape3d.o init.o insideashape.o surfaceNormals.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZEwU4G/R.INSTALL256a981133f66e/alphashape3d/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-alphashape3d/00new/alphashape3d/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (alphashape3d) * installing *source* package ‘manipulateWidget’ ... ** this is package ‘manipulateWidget’ version ‘0.11.2’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (manipulateWidget) * installing *source* package ‘spMaps’ ... ** this is package ‘spMaps’ version ‘0.5.0’ ** package ‘spMaps’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spMaps) * installing *source* package ‘xdvir’ ... ** this is package ‘xdvir’ version ‘0.1-3’ ** package ‘xdvir’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/freetype2 -I/usr/include/libpng16 Using PKG_LIBS=-lfreetype ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoUSbWw/R.INSTALL256ea542d91740/xdvir/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c freetype.c -o freetype.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/freetype2 -I/usr/include/libpng16 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c register.c -o register.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o xdvir.so freetype.o register.o -lfreetype -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoUSbWw/R.INSTALL256ea542d91740/xdvir/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-xdvir/00new/xdvir/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xdvir) * installing *source* package ‘antaresRead’ ... ** this is package ‘antaresRead’ version ‘2.9.3’ ** package ‘antaresRead’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading varAliases is not defined and will be created ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (antaresRead) begin installing package ‘antaresProcessing’ * installing *source* package ‘rAmCharts’ ... ** this is package ‘rAmCharts’ version ‘2.1.16’ ** package ‘rAmCharts’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rAmCharts) * installing *source* package ‘antaresProcessing’ ... ** this is package ‘antaresProcessing’ version ‘0.18.3’ ** package ‘antaresProcessing’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (antaresProcessing) * installing *source* package ‘RNifti’ ... ** this is package ‘RNifti’ version ‘1.9.0’ ** package ‘RNifti’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-15 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-15 accepts -g... yes checking for gcc-15 option to enable C11 features... none needed checking for library containing inflate... -lz configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUsFS4i/R.INSTALL256a96552ab113/RNifti/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c main.cpp -o main.o In file included from ../inst/include/RNifti.h:50, from main.cpp:5: ../inst/include/RNifti/NiftiImage.h: In instantiation of ‘struct RNifti::NiftiImageData::ConcreteTypeHandler >’: ../inst/include/RNifti/NiftiImage.h:207:77: required from here 207 | case DT_COMPLEX64: return new ConcreteTypeHandler(); break; | ^ ../inst/include/RNifti/NiftiImage.h:89:22: warning: ‘virtual void RNifti::NiftiImageData::TypeHandler::minmax(void*, size_t, double*, double*, bool) const’ was hidden [-Woverloaded-virtual=] 89 | virtual void minmax (void *ptr, const size_t length, double *min, double *max, const bool dropNaN = true) const { *min = R_PosInf; *max = R_NegInf; } | ^~~~~~ ../inst/include/RNifti/NiftiImage.h:153:14: note: by ‘void RNifti::NiftiImageData::ConcreteTypeHandler, false>::minmax(void*, size_t, double*, double*, bool) [with ElementType = float; size_t = long unsigned int]’ 153 | void minmax (void *ptr, const size_t length, double *min, double *max, const bool dropNaN = true) | ^~~~~~ ../inst/include/RNifti/NiftiImage.h: In instantiation of ‘struct RNifti::NiftiImageData::ConcreteTypeHandler >’: ../inst/include/RNifti/NiftiImage.h:208:78: required from here 208 | case DT_COMPLEX128: return new ConcreteTypeHandler(); break; | ^ ../inst/include/RNifti/NiftiImage.h:89:22: warning: ‘virtual void RNifti::NiftiImageData::TypeHandler::minmax(void*, size_t, double*, double*, bool) const’ was hidden [-Woverloaded-virtual=] 89 | virtual void minmax (void *ptr, const size_t length, double *min, double *max, const bool dropNaN = true) const { *min = R_PosInf; *max = R_NegInf; } | ^~~~~~ ../inst/include/RNifti/NiftiImage.h:153:14: note: by ‘void RNifti::NiftiImageData::ConcreteTypeHandler, false>::minmax(void*, size_t, double*, double*, bool) [with ElementType = double; size_t = long unsigned int]’ 153 | void minmax (void *ptr, const size_t length, double *min, double *max, const bool dropNaN = true) | ^~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c zzz.c -o zzz.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c znzlib/znzlib.c -o znzlib/znzlib.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c niftilib/nifti1_io.c -o niftilib/nifti1_io.o niftilib/nifti1_io.c:449:14: warning: ‘print_hex_vals’ declared ‘static’ but never defined [-Wunused-function] 449 | static int print_hex_vals (const char * data, size_t nbytes, FILE * fp); | ^~~~~~~~~~~~~~ niftilib/nifti1_io.c:6135:14: warning: ‘escapize_string’ defined but not used [-Wunused-function] 6135 | static char *escapize_string( const char * str ) | ^~~~~~~~~~~~~~~ niftilib/nifti1_io.c:3337:12: warning: ‘compare_strlist’ defined but not used [-Wunused-function] 3337 | static int compare_strlist(const char * str, char ** strlist, int len) | ^~~~~~~~~~~~~~~ niftilib/nifti1_io.c:3323:12: warning: ‘make_lowercase’ defined but not used [-Wunused-function] 3323 | static int make_lowercase(char * str) | ^~~~~~~~~~~~~~ niftilib/nifti1_io.c:3310:12: warning: ‘make_uppercase’ defined but not used [-Wunused-function] 3310 | static int make_uppercase(char * str) | ^~~~~~~~~~~~~~ niftilib/nifti1_io.c:3292:12: warning: ‘is_mixedcase’ defined but not used [-Wunused-function] 3292 | static int is_mixedcase(const char * str) | ^~~~~~~~~~~~ niftilib/nifti1_io.c:3276:12: warning: ‘is_uppercase’ defined but not used [-Wunused-function] 3276 | static int is_uppercase(const char * str) | ^~~~~~~~~~~~ niftilib/nifti1_io.c:363:29: warning: ‘nifti_type_list’ defined but not used [-Wunused-const-variable=] 363 | static const nifti_type_ele nifti_type_list[] = { | ^~~~~~~~~~~~~~~ niftilib/nifti1_io.c:353:19: warning: ‘gni_version’ defined but not used [-Wunused-const-variable=] 353 | static const char gni_version[] = NIFTI1_IO_SOURCE_VERSION " (16 Jun, 2022)"; | ^~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c niftilib/nifti2_io.c -o niftilib/nifti2_io.o niftilib/nifti2_io.c:8250:14: warning: ‘escapize_string’ defined but not used [-Wunused-function] 8250 | static char *escapize_string( const char * str ) | ^~~~~~~~~~~~~~~ niftilib/nifti2_io.c:4468:12: warning: ‘print_hex_vals’ defined but not used [-Wunused-function] 4468 | static int print_hex_vals( const char * data, size_t nbytes, FILE * fp ) | ^~~~~~~~~~~~~~ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o RNifti.so main.o zzz.o znzlib/znzlib.o niftilib/nifti1_io.o niftilib/nifti2_io.o -lz -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUsFS4i/R.INSTALL256a96552ab113/RNifti/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RNifti/00new/RNifti/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RNifti) checking manipulateWidget_0.11.2.tar.gz ... checking antaresViz_0.18.3.tar.gz ... checking ciftiTools_0.18.0.tar.gz ... checking leaflet.minicharts_0.6.3.tar.gz ... checking rgl_1.3.31.tar.gz ... checking rgl2gltf_1.0.7.tar.gz ... checking sankeywheel_0.1.0.tar.gz ... Depends: Package: manipulateWidget Depends: R (>= 2.10) Imports: shiny (>= 1.0.3), miniUI, htmltools, htmlwidgets, knitr, methods, tools, base64enc, grDevices, codetools, webshot, shinyjs Timings: user system elapsed manipulateWidget 40.728 4.64 47.847 Results: Check status summary: NOTE OK Source packages 1 0 Reverse depends 1 5 Check results summary: manipulateWidget ... NOTE * checking CRAN incoming feasibility ... [4s/5s] NOTE rdepends_antaresViz ... OK rdepends_ciftiTools ... OK rdepends_leaflet.minicharts ... OK rdepends_rgl ... NOTE * checking relative paths in package URLs ... NOTE rdepends_rgl2gltf ... OK rdepends_sankeywheel ... OK