library(testthat) library(magi) x <- cbind(1:4, 4:1) theta <- c(0.2, 0.2, 3) dynamicalModelList <- list( modelODE = magi:::fnmodelODE, modelDtheta = magi:::fnmodelDtheta, modelDx = magi:::fnmodelDx ) with(dynamicalModelList, testDynamicalModel(modelODE, modelDx, modelDtheta, "FN system", x, theta)) x <- cbind(1:4, 4:1, sin(1:4)) theta <- c(0.022, 0.3, 0.031, 0.028, 0.5, 20, 0.3) dynamicalModelList <- list( modelODE = magi:::hes1modelODE, modelDtheta = magi:::hes1modelDtheta, modelDx = magi:::hes1modelDx ) with(dynamicalModelList, testDynamicalModel(modelODE, modelDx, modelDtheta, "Hes1 system", x, theta)) x <- cbind(1:4, 4:1, sin(1:4)+2) theta <- c(0.022, 0.3, 0.031, 0.028, 0.5, 20, 0.3) dynamicalModelList <- list( modelODE = magi:::hes1logmodelODE, modelDtheta = magi:::hes1logmodelDtheta, modelDx = magi:::hes1logmodelDx ) with(dynamicalModelList, testDynamicalModel(modelODE, modelDx, modelDtheta, "Hes1-log system", x, theta)) # x <- cbind(1:4, 4:1, sin(1:4), cos(1:4)) # theta <- c(0.014, 1.16e-9, 1.3e-9, 5e-10, 3.62e-9, 1.56e-9, 1e-8, 1e-8, 1e-8) # dynamicalModelList <- list( # modelODE = magi:::HIVmodelODE, # modelDtheta = magi:::HIVmodelDtheta, # modelDx = magi:::HIVmodelDx # ) # with(dynamicalModelList, testDynamicalModel(modelODE, modelDx, modelDtheta, "HIV system", x, theta))