R Under development (unstable) (2024-05-04 r86521 ucrt) -- "Unsuffered Consequences"
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> library(testthat)
> 
> testthat::test_that("on attach messages", {
+   expect_message(library(magi))
+ })
Test passed 🥇
> 
> test_check("magi")
t = 1; acceptance rate = 0; log-posterior value = 96.5294; theta =   0.2000   0.2000   3.0000
t = 101; acceptance rate = 0.68; log-posterior value = -111.076; theta =   0.1958   0.2256   2.9741
t = 1; acceptance rate = 0; log-posterior value = 96.5294; theta =   0.2000   0.2000   3.0000
t = 101; acceptance rate = 0.82; log-posterior value = -96.1765; theta =   0.2014   0.2393   2.9890
FN system model, with derivatives
Dx and Dtheta appear to be correct
Hes1 system model, with derivatives
Dx and Dtheta appear to be correct
Hes1-log system model, with derivatives
Dx and Dtheta appear to be correct
phi = 
   2.2396   0.6578
   1.6332   2.9407

thetaInit = 
   0.2429
   0.2159
   2.6842

t = 1; acceptance rate = 0.5; log-posterior value = -5088.81; theta =   0.0914   0.5230   2.2903
phi = 
   2.2400   0.6500
   1.6400   2.9300

thetaInit = 
   0.2431
   0.2157
   2.6789

t = 1; acceptance rate = 0.5; log-posterior value = -6268.13; theta =   0.0902   0.5183   2.2269
phi = 
   2.2396   0.6578
   1.6332   2.9407

thetaInit = 
   0.2429
   0.2159
   2.6842

t = 1; acceptance rate = 0.5; log-posterior value = -5526.09; theta =   0.1196   0.4699   2.1851
t = 1; acceptance rate = 0; log-posterior value = 7.50032; theta =   0.1510   0.8508   2.2131
t = 1; acceptance rate = 0; log-posterior value = 7.14994; theta =   0.1462   0.8735   2.1585
t = 1; acceptance rate = 0; log-posterior value = 6.33745; theta =   0.1398   0.8825   2.2129
phi = 
   2.2396   0.6578
   1.6332   2.9407

thetaInit = 
   0.2429
   0.2159
   2.6842

t = 1; acceptance rate = 0.5; log-posterior value = -5840.26; theta =   0.1095   0.4801   2.2394
t = 101; acceptance rate = 0.9; log-posterior value = -138.222; theta =   0.1350   0.7946   2.3796
t = 1; acceptance rate = 0.5; log-posterior value = -66.5886; theta =   0.1338   0.8789   2.3129
t = 101; acceptance rate = 0.89; log-posterior value = -151.623; theta =   0.1047   0.9135   2.2040
t = 1; acceptance rate = 0; log-posterior value = 6.08131; theta =   0.0819   0.8748   2.2950
t = 101; acceptance rate = 0.76; log-posterior value = -163.012; theta =   0.0835   0.9092   2.2261
t = 1; acceptance rate = 0.5; log-posterior value = -65.3066; theta =   0.1023   0.8947   2.1725
t = 101; acceptance rate = 0.94; log-posterior value = -144.052; theta =   0.0890   0.8687   2.2332
[1] 100.0000000   0.8600000   1.7805214   0.6459524   0.2784685
[ FAIL 0 | WARN 0 | SKIP 20 | PASS 247 ]

══ Skipped tests (20) ══════════════════════════════════════════════════════════
• On CRAN (7): 'test_benchmarkSpeed.R:57:3', 'test_hmc.R:8:3',
  'test_hmc.R:22:3', 'test_xthetaphillik.R:41:3', 'test_xthetaphillik.R:82:3',
  'test_xthetaphillik.R:132:3', 'test_xthetasigmallik.R:46:3'
• compact1 is no longer in use (1): 'test_phisigllikC.R:33:7'
• empty test (4): 'test_kernel.R:192:1', 'test_kernel.R:201:1',
  'test_kernel.R:214:1', 'test_kernel.R:223:1'
• periodicMatern dCdphi is wrong for the 3rd parameter (1):
  'test_kernel.R:40:5'
• periodicMatern magi:::phisigllik gradient has problem for eta, needs debug
  (1): 'test_phisigllikC.R:41:7'
• periodicMatern phisigSample runs with error, needs debug (1):
  'test_phisigllikC.R:57:7'
• rationalQuadratic derivative variance Kmat too small (2):
  'test_kernel.R:104:5', 'test_kernel.R:174:5'
• rbf derivative variance Kmat too small (2): 'test_kernel.R:103:5',
  'test_kernel.R:135:5'
• segfault due to null pointer in hes1logmodel function, passing is wrong (1):
  'test_optimizePhi.R:179:3'

[ FAIL 0 | WARN 0 | SKIP 20 | PASS 247 ]
> 
> #' check test code coverage
> 
> proc.time()
   user  system elapsed 
  43.60    3.01   46.57