* using log directory 'd:/RCompile/CRANincoming/R-devel/mLLMCelltype.Rcheck' * using R Under development (unstable) (2025-06-26 r88362 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'mLLMCelltype/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'mLLMCelltype' version '1.2.9' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Chen Yang ' New submission Possibly misspelled words in DESCRIPTION: LLMs (10:73, 12:58) Found the following (possibly) invalid URLs: URL: https://cafferychen777.github.io/mLLMCelltype/ (moved to https://cafferyang.com/mLLMCelltype/) From: DESCRIPTION Status: 301 Message: Moved Permanently URL: https://console.anthropic.com/keys From: inst/doc/getting-started.html Status: 404 Message: Not Found URL: https://platform.openai.com/ From: inst/doc/installation.html Status: 403 Message: Forbidden URL: https://platform.openai.com/api-keys From: inst/doc/getting-started.html Status: 403 Message: Forbidden URL: https://www.biorxiv.org/content/10.1101/2025.04.10.647852v1 From: inst/doc/mLLMCelltype.html Status: 403 Message: Forbidden URL: https://www.biorxiv.org/content/early/2025/04/17/2025.04.10.647852 From: inst/CITATION Status: 403 Message: Forbidden For content that is 'Moved Permanently', please change http to https, add trailing slashes, or replace the old by the new URL. Found the following (possibly) invalid file URIs: URI: 09-contributing-guide.html From: inst/doc/advanced-features.html URI: news/index.html From: inst/doc/advanced-features.html URI: 01-introduction.html From: inst/doc/advanced-features.html URI: 06-visualization-guide.html From: inst/doc/consensus-principles.html URI: 07-faq.html From: inst/doc/consensus-principles.html URI: 08-advanced-features.html From: inst/doc/consensus-principles.html URI: 09-contributing-guide.html From: inst/doc/consensus-principles.html URI: 10-version-history.html From: inst/doc/contributing-guide.html URI: 08-advanced-features.html From: inst/doc/contributing-guide.html URI: 07-faq.html From: inst/doc/contributing-guide.html URI: 09-contributing-guide.html From: inst/doc/faq.html URI: 08-advanced-features.html From: inst/doc/faq.html URI: 10-version-history.html From: inst/doc/faq.html URI: 04-usage-tutorial.html From: inst/doc/getting-started.html URI: 05-consensus-principles.html From: inst/doc/getting-started.html URI: 06-visualization-guide.html From: inst/doc/getting-started.html URI: 08-advanced-features.html From: inst/doc/getting-started.html URI: 07-faq.html From: inst/doc/getting-started.html URI: 03-getting-started.html From: inst/doc/installation.html URI: 04-usage-tutorial.html From: inst/doc/installation.html URI: 06-visualization-guide.html From: inst/doc/installation.html URI: 02-installation.html From: inst/doc/introduction.html URI: 03-getting-started.html From: inst/doc/introduction.html URI: 04-usage-tutorial.html From: inst/doc/introduction.html URI: 05-consensus-principles.html From: inst/doc/introduction.html URI: 05-consensus-principles.html From: inst/doc/usage-tutorial.html URI: 06-visualization-guide.html From: inst/doc/usage-tutorial.html URI: 07-faq.html From: inst/doc/usage-tutorial.html URI: 08-advanced-features.html From: inst/doc/usage-tutorial.html URI: 09-contributing-guide.html From: inst/doc/version-history.html URI: 01-introduction.html From: inst/doc/version-history.html URI: 08-advanced-features.html From: inst/doc/version-history.html URI: 07-faq.html From: inst/doc/version-history.html URI: visualization_gallery.html From: inst/doc/visualization-guide.html URI: 07-faq.html From: inst/doc/visualization-guide.html URI: 08-advanced-features.html From: inst/doc/visualization-guide.html URI: 09-contributing-guide.html From: inst/doc/visualization-guide.html URI: 10-version-history.html From: inst/doc/visualization-guide.html Size of tarball: 36269460 bytes * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'mLLMCelltype' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [16s] OK * checking PDF version of manual ... [14s] OK * checking HTML version of manual ... OK * DONE Status: 1 NOTE