downloading reverse dependencies ... downloading eventPred_0.2.8.tar.gz ... ok downloading graphicalMCP_0.2.8.tar.gz ... ok installing dependencies ‘erify’, ‘gMCP’, ‘lrstat’, ‘prompt’ also installing the dependencies ‘CommonJavaJars’, ‘JavaGD’ begin installing package ‘CommonJavaJars’ begin installing package ‘JavaGD’ begin installing package ‘erify’ begin installing package ‘lrstat’ begin installing package ‘prompt’ * installing *source* package ‘CommonJavaJars’ ... ** this is package ‘CommonJavaJars’ version ‘1.1-0’ ** package ‘CommonJavaJars’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CommonJavaJars) * installing *source* package ‘erify’ ... ** this is package ‘erify’ version ‘0.6.0’ ** package ‘erify’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (erify) * installing *source* package ‘prompt’ ... ** this is package ‘prompt’ version ‘1.0.2’ ** package ‘prompt’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prompt) * installing *source* package ‘JavaGD’ ... ** this is package ‘JavaGD’ version ‘0.6-5’ ** package ‘JavaGD’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-14 -std=gnu23 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-14 -std=gnu23 accepts -g... yes checking for gcc-14 -std=gnu23 option to enable C11 features... none needed checking for sys/wait.h that is POSIX.1 compatible... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for GNU libc compatible malloc... yes checking for memset... yes checking for mkdir... yes checking for rmdir... yes checking for select... yes checking for socket... yes checking Java support in R... present: interpreter : '/usr/bin/java' cpp flags : '-I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux' java libs : '-L/usr/lib/jvm/java-21-openjdk-amd64/lib/server -ljvm' checking whether JNI programs can be compiled... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/config.h ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpniG2da/R.INSTALL69dbeb685669/JavaGD/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -Iinclude -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dummy.c -o dummy.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -Iinclude -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c jGDtalk.c -o jGDtalk.o jGDtalk.c:257:13: warning: ‘newJavaGD_Hold’ defined but not used [-Wunused-function] 257 | static void newJavaGD_Hold(NewDevDesc *dd) | ^~~~~~~~~~~~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -Iinclude -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c javaGD.c -o javaGD.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/lib/jvm/java-21-openjdk-amd64/include -I/usr/lib/jvm/java-21-openjdk-amd64/include/linux -Iinclude -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c s2u.c -o s2u.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o JavaGD.so dummy.o jGDtalk.o javaGD.o s2u.o -L/usr/lib/jvm/java-21-openjdk-amd64/lib/server -ljvm -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpniG2da/R.INSTALL69dbeb685669/JavaGD/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-JavaGD/00new/JavaGD/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (JavaGD) begin installing package ‘gMCP’ * installing *source* package ‘gMCP’ ... ** this is package ‘gMCP’ version ‘0.8-17’ ** package ‘gMCP’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpHEgECQ/R.INSTALL6a20560f5d06e/gMCP/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gMCP.c -o gMCP.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gMCP_init.c -o gMCP_init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mcp.c -o mcp.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o gMCP.so gMCP.o gMCP_init.o mcp.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpHEgECQ/R.INSTALL6a20560f5d06e/gMCP/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-gMCP/00new/gMCP/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gMCP) * installing *source* package ‘lrstat’ ... ** this is package ‘lrstat’ version ‘0.2.14’ ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDLVgOR/R.INSTALL69dc02d2d42aa/lrstat/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c basket.cpp -o basket.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kmstat.cpp -o kmstat.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c logistic_regression.cpp -o logistic_regression.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lrsim.cpp -o lrsim.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lrstat.cpp -o lrstat.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c misc.cpp -o misc.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nbstat.cpp -o nbstat.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rmstat.cpp -o rmstat.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c survival_analysis.cpp -o survival_analysis.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utilities.cpp -o utilities.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o lrstat.so RcppExports.o basket.o kmstat.o logistic_regression.o lrsim.o lrstat.o misc.o nbstat.o rmstat.o survival_analysis.o utilities.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDLVgOR/R.INSTALL69dc02d2d42aa/lrstat/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-lrstat/00new/lrstat/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lrstat) checking lrstat_0.2.14.tar.gz ... checking graphicalMCP_0.2.8.tar.gz ... checking eventPred_0.2.8.tar.gz ... Depends: Package: lrstat Depends: R (>= 2.10) Imports: Rcpp (>= 1.0.9), mvtnorm (>= 1.1-3), lpSolve (>= 5.6.1), shiny (>= 1.7.1) LinkingTo: Rcpp Timings: user system elapsed lrstat 330.06 11.979 345.999 Results: Check status summary: OK Source packages 1 Reverse depends 2 Check results summary: lrstat ... OK rdepends_eventPred ... OK rdepends_graphicalMCP ... OK