* installing *source* package ‘lotri’ ... ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11armadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c asLotriMat.c -o asLotriMat.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11armadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lotriBounds.c -o lotriBounds.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11armadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lotriLstToMat.c -o lotriLstToMat.o In file included from lotriLstToMat.c:1: In function ‘setStrElt’, inlined from ‘lotriLstToMatFillInMatrixBand’ at lotriLstToMat.h:97:4, inlined from ‘lotriLstToMatFillInFullMatrix’ at lotriLstToMat.h:131:5, inlined from ‘_lotriLstToMat’ at lotriLstToMat.c:178:3: matlist.h:123:5: warning: ‘colnames’ may be used uninitialized [-Wmaybe-uninitialized] 123 | SET_STRING_ELT(retN, curBand+j, STRING_ELT(colnames, j)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from matlist.h:186: lotriLstToMat.h: In function ‘_lotriLstToMat’: lotriLstToMat.h:108:25: note: ‘colnames’ was declared here 108 | SEXP sameS, dimnames, colnames, curFixed = R_NilValue; | ^~~~~~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11armadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lotriNest.c -o lotriNest.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11armadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lotriProp.c -o lotriProp.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11armadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matlist.c -o matlist.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11armadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c nearPD.cpp -o nearPD.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include/cpp11.hpp:3, from /home/hornik/tmp/CRAN_recheck/Library/cpp11armadillo/include/armadillo/r_messages.hpp:1, from /home/hornik/tmp/CRAN_recheck/Library/cpp11armadillo/include/armadillo.hpp:28, from nearPD.cpp:4: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include/cpp11/R.hpp:11:9: warning: "R_NO_REMAP" redefined 11 | #define R_NO_REMAP | ^~~~~~~~~~ : note: this is the location of the previous definition /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include/cpp11/R.hpp:12:9: warning: "STRICT_R_HEADERS" redefined 12 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/tmp/CRAN_recheck/Library/cpp11armadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c rcm.cpp -o rcm.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include/cpp11.hpp:3, from /home/hornik/tmp/CRAN_recheck/Library/cpp11armadillo/include/armadillo/r_messages.hpp:1, from /home/hornik/tmp/CRAN_recheck/Library/cpp11armadillo/include/armadillo.hpp:28, from rcm.cpp:1: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include/cpp11/R.hpp:11:9: warning: "R_NO_REMAP" redefined 11 | #define R_NO_REMAP | ^~~~~~~~~~ : note: this is the location of the previous definition /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include/cpp11/R.hpp:12:9: warning: "STRICT_R_HEADERS" redefined 12 | #define STRICT_R_HEADERS | ^~~~~~~~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o lotri.so asLotriMat.o lotriBounds.o lotriLstToMat.o lotriNest.o lotriProp.o matlist.o nearPD.o rcm.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR installing to /home/hornik/tmp/CRAN_recheck/lotri.Rcheck/00LOCK-lotri/00new/lotri/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lotri)