downloading reverse dependencies ‘oddnet’ trying URL 'file:///data/Repositories/CRAN/src/contrib/oddnet_0.1.1.tar.gz' Content type 'unknown' length 181855 bytes (177 KB) ================================================== installing dependencies ‘DDoutlier’, ‘lookout’, ‘TDAstats’ Warning: package ‘DDoutlier’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages begin installing package ‘TDAstats’ Warning: SystemRequirements specified C++11: support has been removed * installing *source* package ‘TDAstats’ ... ** this is package ‘TDAstats’ version ‘0.4.1’ ** package ‘TDAstats’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++11 using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWTu3E7/R.INSTALL2ddda6e818418/TDAstats/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ripser_short.cpp -o ripser_short.o ripser_short.cpp: In function ‘bool is_prime(coefficient_t_ripser)’: ripser_short.cpp:50:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 50 | for (coefficient_t_ripser p = 3, q = n / p, r = n % p; p <= q; p += 2, q = n / p, r = n % p) | ^~~ ripser_short.cpp:52:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 52 | return true; | ^~~~~~ ripser_short.cpp: In member function ‘value_t_ripser rips_filtration_comparator::diameter(index_t_ripser) const’: ripser_short.cpp:165:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 165 | for (index_t_ripser i = 0; i <= dim; ++i) | ^~~ ripser_short.cpp:167:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 167 | return diam; | ^~~~~~ ripser_short.cpp: In member function ‘void compressed_distance_matrix::init_rows() [with compressed_matrix_layout Layout = LOWER_TRIANGULAR]’: ripser_short.cpp:255:32: warning: comparison of integer expressions of different signedness: ‘index_t_ripser’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 255 | for (index_t_ripser i = 1; i < size(); ++i) { | ~~^~~~~~~~ ripser_short.cpp: In member function ‘void compressed_distance_matrix::init_rows() [with compressed_matrix_layout Layout = UPPER_TRIANGULAR]’: ripser_short.cpp:263:32: warning: comparison of integer expressions of different signedness: ‘index_t_ripser’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 263 | for (index_t_ripser i = 0; i < size() - 1; ++i) { | ~~^~~~~~~~~~~~ ripser_short.cpp: In function ‘compressed_lower_distance_matrix getLowerDistMatrix(Rcpp::NumericMatrix)’: ripser_short.cpp:557:17: warning: unused variable ‘numCols’ [-Wunused-variable] 557 | numCols = inputMat.ncol(); | ^~~~~~~ ripser_short.cpp: In function ‘Rcpp::NumericVector ripser_cpp(Rcpp::NumericMatrix, int, float, int)’: ripser_short.cpp:671:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 671 | for (int i = 0; i < pers_hom.size(); i++) | ~~^~~~~~~~~~~~~~~~~ ripser_short.cpp:671:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 671 | for (int i = 0; i < pers_hom.size(); i++) | ^~~ ripser_short.cpp:677:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 677 | return ans; | ^~~~~~ ripser_short.cpp: In instantiation of ‘void compute_pairs(std::vector&, hash_map&, index_t_ripser, index_t_ripser, value_t_ripser, coefficient_t_ripser, const std::vector&, const DistanceMatrix&, const ComparatorCofaces&, const Comparator&, const binomial_coeff_table&, std::vector >&) [with DistanceMatrix = compressed_distance_matrix; ComparatorCofaces = rips_filtration_comparator >; Comparator = rips_filtration_comparator >; index_t_ripser = long int; value_t_ripser = double; coefficient_t_ripser = short int]’: ripser_short.cpp:661:18: required from here 661 | compute_pairs(columns_to_reduce, pivot_column_index, dim, n, threshold, modulus, multiplicative_inverse, dist, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 | comp, comp_prev, binomial_coeff, pers_hom); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ripser_short.cpp:436:32: warning: comparison of integer expressions of different signedness: ‘index_t_ripser’ {aka ‘long int’} and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 436 | for (index_t_ripser i = 0; i < columns_to_reduce.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o TDAstats.so RcppExports.o ripser_short.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWTu3E7/R.INSTALL2ddda6e818418/TDAstats/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-TDAstats/00new/TDAstats/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TDAstats) begin installing package ‘lookout’ * installing *source* package ‘lookout’ ... ** this is package ‘lookout’ version ‘2.0.0’ ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lookout) checking lookout_2.0.0.tar.gz ... checking oddnet_0.1.1.tar.gz ... Depends: Package: lookout Imports: evd, ggplot2, RANN, robustbase, stats, TDAstats, tidyr Timings: user system elapsed lookout 33.689 4.508 41.119 Results: Check status summary: OK Source packages 1 Reverse depends 1 Check results summary: lookout ... OK rdepends_oddnet ... OK Check results changes: Package: oddnet Check: CRAN incoming feasibility Old result: NOTE