Package check result: NOTE

Check: CRAN incoming feasibility, Result: NOTE
  Maintainer: ‘Jonah Gabry <jgabry@gmail.com>’
  
  New maintainer:
    Jonah Gabry <jgabry@gmail.com>
  Old maintainer(s):
    Jonah Gabry <jsg2201@columbia.edu>

Changes to worse in reverse depends:

Package: flocker
Check: tests
New result: ERROR
    Running ‘spelling.R’ [0s/0s]
    Running ‘testthat.R’ [0m/30m]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > library(testthat)
    > library(flocker)
    > 
    > test_check("flocker")
    Formatting data for a single-season occupancy model. For details, see make_flocker_data_static. All warnings and error messages should be interpreted in the context of make_flocker_data_static
    Compiling Stan program...
    Start sampling
    
    SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
    Chain 1: 
    Chain 1: Gradient evaluation took 0.000203 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 2.03 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1: 
    Chain 1: 
    Chain 1: WARNING: No variance estimation is
    Chain 1:          performed for num_warmup < 20
    Chain 1: 
    Chain 1: Iteration: 1 / 8 [ 12%]  (Warmup)
    Chain 1: Iteration: 2 / 8 [ 25%]  (Warmup)
    Chain 1: Iteration: 3 / 8 [ 37%]  (Warmup)
    Chain 1: Iteration: 4 / 8 [ 50%]  (Warmup)
    Chain 1: Iteration: 5 / 8 [ 62%]  (Sampling)
    Chain 1: Iteration: 6 / 8 [ 75%]  (Sampling)
    Chain 1: Iteration: 7 / 8 [ 87%]  (Sampling)
    Chain 1: Iteration: 8 / 8 [100%]  (Sampling)
    Chain 1: 
    Chain 1:  Elapsed Time: 0.001 seconds (Warm-up)
    Chain 1:                0.003 seconds (Sampling)
    Chain 1:                0.004 seconds (Total)
    Chain 1: 
    
    SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2).
    Chain 2: 
    Chain 2: Gradient evaluation took 8.2e-05 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.82 seconds.
    Chain 2: Adjust your expectations accordingly!
    Chain 2: 
    Chain 2: 
    Chain 2: WARNING: No variance estimation is
    Chain 2:          performed for num_warmup < 20
    Chain 2: 
    Chain 2: Iteration: 1 / 8 [ 12%]  (Warmup)
    Chain 2: Iteration: 2 / 8 [ 25%]  (Warmup)
    Chain 2: Iteration: 3 / 8 [ 37%]  (Warmup)
    Chain 2: Iteration: 4 / 8 [ 50%]  (Warmup)
    Chain 2: Iteration: 5 / 8 [ 62%]  (Sampling)
    Chain 2: Iteration: 6 / 8 [ 75%]  (Sampling)
    Chain 2: Iteration: 7 / 8 [ 87%]  (Sampling)
    Chain 2: Iteration: 8 / 8 [100%]  (Sampling)
    Chain 2: 
    Chain 2:  Elapsed Time: 0.001 seconds (Warm-up)
    Chain 2:                0.004 seconds (Sampling)
    Chain 2:                0.005 seconds (Total)
    Chain 2: 
    
    SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 3).
    Chain 3: 
    Chain 3: Gradient evaluation took 9.2e-05 seconds
    Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.92 seconds.
    Chain 3: Adjust your expectations accordingly!
    Chain 3: 
    Chain 3: 
    Chain 3: WARNING: No variance estimation is
    Chain 3:          performed for num_warmup < 20
    Chain 3: 
    Chain 3: Iteration: 1 / 8 [ 12%]  (Warmup)
    Chain 3: Iteration: 2 / 8 [ 25%]  (Warmup)
    Chain 3: Iteration: 3 / 8 [ 37%]  (Warmup)
    Chain 3: Iteration: 4 / 8 [ 50%]  (Warmup)
    Chain 3: Iteration: 5 / 8 [ 62%]  (Sampling)
    Chain 3: Iteration: 6 / 8 [ 75%]  (Sampling)
    Chain 3: Iteration: 7 / 8 [ 87%]  (Sampling)
    Chain 3: Iteration: 8 / 8 [100%]  (Sampling)
    Chain 3: 
    Chain 3:  Elapsed Time: 0.006 seconds (Warm-up)
    Chain 3:                0.005 seconds (Sampling)
    Chain 3:                0.011 seconds (Total)
    Chain 3: 
    
    SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 4).
    Chain 4: 
    Chain 4: Gradient evaluation took 9.4e-05 seconds
    Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.94 seconds.
    Chain 4: Adjust your expectations accordingly!
    Chain 4: 
    Chain 4: 
    Chain 4: WARNING: No variance estimation is
    Chain 4:          performed for num_warmup < 20
    Chain 4: 
    Chain 4: Iteration: 1 / 8 [ 12%]  (Warmup)
    Chain 4: Iteration: 2 / 8 [ 25%]  (Warmup)
    Chain 4: Iteration: 3 / 8 [ 37%]  (Warmup)
    Chain 4: Iteration: 4 / 8 [ 50%]  (Warmup)
    Chain 4: Iteration: 5 / 8 [ 62%]  (Sampling)
    Chain 4: Iteration: 6 / 8 [ 75%]  (Sampling)
    Chain 4: Iteration: 7 / 8 [ 87%]  (Sampling)
    Chain 4: Iteration: 8 / 8 [100%]  (Sampling)
    Chain 4: 
    Chain 4:  Elapsed Time: 0.002 seconds (Warm-up)
    Chain 4:                0.002 seconds (Sampling)
    Chain 4:                0.004 seconds (Total)
    Chain 4: 
    Formatting data for a single-season multispecies occupancy model with data augmentation for never-observed species. For details, see make_flocker_data_augmented.  All warnings and error messages should be interpreted in the context of make_flocker_data_augmented
    formatting rep indices
    
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    Compiling Stan program...
    Start sampling
    
    SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 1).
    Chain 1: 
    Chain 1: Gradient evaluation took 0.002135 seconds
    Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 21.35 seconds.
    Chain 1: Adjust your expectations accordingly!
    Chain 1: 
    Chain 1: 
    Chain 1: WARNING: No variance estimation is
    Chain 1:          performed for num_warmup < 20
    Chain 1: 
    Chain 1: Iteration: 1 / 8 [ 12%]  (Warmup)
    Chain 1: Iteration: 2 / 8 [ 25%]  (Warmup)
    Chain 1: Iteration: 3 / 8 [ 37%]  (Warmup)
    Chain 1: Iteration: 4 / 8 [ 50%]  (Warmup)
    Chain 1: Iteration: 5 / 8 [ 62%]  (Sampling)
    Chain 1: Iteration: 6 / 8 [ 75%]  (Sampling)
    Chain 1: Iteration: 7 / 8 [ 87%]  (Sampling)
    Chain 1: Iteration: 8 / 8 [100%]  (Sampling)
    Chain 1: 
    Chain 1:  Elapsed Time: 0.026 seconds (Warm-up)
    Chain 1:                0.015 seconds (Sampling)
    Chain 1:                0.041 seconds (Total)
    Chain 1: 
    
    SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 2).
    Chain 2: 
    Chain 2: Gradient evaluation took 0.001122 seconds
    Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 11.22 seconds.
    Chain 2: Adjust your expectations accordingly!
    Chain 2: 
    Chain 2: 
    Chain 2: WARNING: No variance estimation is
    Chain 2:          performed for num_warmup < 20
    Chain 2: 
    Chain 2: Iteration: 1 / 8 [ 12%]  (Warmup)
    Chain 2: Iteration: 2 / 8 [ 25%]  (Warmup)
    Chain 2: Iteration: 3 / 8 [ 37%]  (Warmup)
    Chain 2: Iteration: 4 / 8 [ 50%]  (Warmup)
    Chain 2: Iteration: 5 / 8 [ 62%]  (Sampling)
    Chain 2: Iteration: 6 / 8 [ 75%]  (Sampling)
    Chain 2: Iteration: 7 / 8 [ 87%]  (Sampling)
    Chain 2: Iteration: 8 / 8 [100%]  (Sampling)
    Chain 2: 
    Chain 2:  Elapsed Time: 0.012 seconds (Warm-up)
    Chain 2:                0.017 seconds (Sampling)
    Chain 2:                0.029 seconds (Total)
    Chain 2: 
    
    SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 3).
    Chain 3: 
    Chain 3: Gradient evaluation took 0.001232 seconds
    Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 12.32 seconds.
    Chain 3: Adjust your expectations accordingly!
    Chain 3: 
    Chain 3: 
    Chain 3: WARNING: No variance estimation is
    Chain 3:          performed for num_warmup < 20
    Chain 3: 
    Chain 3: Iteration: 1 / 8 [ 12%]  (Warmup)
    Chain 3: Iteration: 2 / 8 [ 25%]  (Warmup)
    Chain 3: Iteration: 3 / 8 [ 37%]  (Warmup)
    Chain 3: Iteration: 4 / 8 [ 50%]  (Warmup)
    Chain 3: Iteration: 5 / 8 [ 62%]  (Sampling)
    Chain 3: Iteration: 6 / 8 [ 75%]  (Sampling)
    Chain 3: Iteration: 7 / 8 [ 87%]  (Sampling)
    Chain 3: Iteration: 8 / 8 [100%]  (Sampling)
    Chain 3: 
    Chain 3:  Elapsed Time: 0.045 seconds (Warm-up)
    Chain 3:                0.017 seconds (Sampling)
    Chain 3:                0.062 seconds (Total)
    Chain 3: 
    
    SAMPLING FOR MODEL 'anon_model' NOW (CHAIN 4).
    Chain 4: 
    Chain 4: Gradient evaluation took 0.001073 seconds
    Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 10.73 seconds.
    Chain 4: Adjust your expectations accordingly!
    Chain 4: 
    Chain 4: 
    Chain 4: WARNING: No variance estimation is
    Chain 4:          performed for num_warmup < 20
    Chain 4: 
    Chain 4: Iteration: 1 / 8 [ 12%]  (Warmup)
    Chain 4: Iteration: 2 / 8 [ 25%]  (Warmup)
    Chain 4: Iteration: 3 / 8 [ 37%]  (Warmup)
    Chain 4: Iteration: 4 / 8 [ 50%]  (Warmup)
    Chain 4: Iteration: 5 / 8 [ 62%]  (Sampling)
    Chain 4: Iteration: 6 / 8 [ 75%]  (Sampling)
    Chain 4: Iteration: 7 / 8 [ 87%]  (Sampling)
    Chain 4: Iteration: 8 / 8 [100%]  (Sampling)
    Chain 4: 
    Chain 4:  Elapsed Time: 0.155 seconds (Warm-up)
    Chain 4:                0.13 seconds (Sampling)
    Chain 4:                0.285 seconds (Total)
    Chain 4: 
    Formatting data for a multi-season occupancy model. For details, see make_flocker_data_dynamic.  All warnings and error messages should be interpreted in the context of make_flocker_data_dynamic
    formatting unit indices
    
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    formatting rep indices
    
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    Compiling Stan program...