* using log directory ‘/srv/hornik/tmp/CRAN/logrank.Rcheck’ * using R Under development (unstable) (2024-06-22 r86814) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.5 (2) Debian flang-new version 18.1.5 (2) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘logrank/DESCRIPTION’ ... OK * this is package ‘logrank’ version ‘0.1’ * checking CRAN incoming feasibility ... [3s/4s] NOTE Maintainer: ‘Han Zhang ’ New submission Possibly misspelled words in DESCRIPTION: Logrank (1:8) coxph (13:32) logrank (14:12) The Title field starts with the package name. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘logrank’ can be installed ... [31s/31s] OK * used C compiler: ‘Debian clang version 18.1.6 (1)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... WARNING Registered S3 methods from standard package(s) overwritten by 'logrank': method from [.aareg survival [.Surv survival [.Surv2 survival [.cox.zph survival [.coxph.penalty survival [.ratetable survival [.ratetable2 survival [.survfit survival [.survfitms survival [.tcut survival [.tmerge survival Math.Surv survival Math.Surv2 survival Math.ratetable survival Ops.Surv survival Ops.Surv2 survival Ops.ratetable survival Summary.Surv survival Summary.Surv2 survival anyDuplicated.Surv survival anyDuplicated.Surv2 survival anova.coxph survival anova.coxphlist survival anova.survreg survival anova.survreglist survival aggregate.survfit survival as.character.Surv survival as.character.Surv2 survival as.data.frame.Surv survival as.data.frame.Surv2 survival as.logical.Surv survival as.logical.Surv2 survival as.matrix.ratetable survival as.matrix.Surv survival as.matrix.Surv2 survival barplot.Surv survival c.Surv survival c.Surv2 survival coef.concordance survival coef.coxphms survival coef.survfit survival confint.survfit survival density.Surv survival dim.survfit survival duplicated.Surv survival duplicated.Surv2 survival extractAIC.coxph.penal survival fitted.coxph survival fitted.survreg survival format.Surv survival format.Surv2 survival head.Surv survival hist.Surv survival hist.Surv2 survival identify.Surv survival identify.Surv2 survival image.Surv survival image.Surv2 survival is.na.Surv survival is.na.Surv2 survival is.na.coxph.penalty survival is.na.ratetable survival is.na.ratetable2 survival labels.survreg survival levels.Surv survival levels.tcut survival lines.aareg survival lines.Surv survival lines.Surv2 survival lines.survexp survival lines.survfit survival logLik.coxph survival logLik.coxph.null survival logLik.survreg survival makepredictcall.pspline survival makepredictcall.nsk survival median.Surv survival median.survfit survival model.frame.coxph survival model.frame.survfit survival model.frame.survreg survival model.matrix.coxph survival model.matrix.survreg survival nobs.coxph survival nobs.survreg survival pairs.Surv survival pairs.Surv2 survival plot.aareg survival plot.cox.zph survival plot.Surv survival plot.survfit survival points.Surv survival points.Surv2 survival points.survfit survival predict.coxph survival predict.coxphms survival predict.coxph.penal survival predict.pspline survival predict.survreg survival predict.survreg.penal survival print.Surv survival print.Surv2 survival print.aareg survival print.cch survival print.clogit survival print.concordance survival print.cox.zph survival print.coxph survival print.coxph.null survival print.coxph.penal survival print.pyears survival print.ratetable survival print.summary.aareg survival print.summary.cch survival print.summary.coxph survival print.summary.coxph.penal survival print.summary.survexp survival print.summary.survfit survival print.summary.survfitms survival print.summary.survreg survival print.survdiff survival print.survcheck survival print.survexp survival print.survfit survival print.survfitms survival print.survreg survival print.survreg.penal survival print.yates survival quantile.Surv survival quantile.survfit survival quantile.survfitms survival rep.Surv survival rep.Surv2 survival rep.int.Surv survival rep.int.Surv2 survival rep_len.Surv survival rep_len.Surv2 survival residuals.coxph survival residuals.coxphms survival residuals.coxph.null survival residuals.coxph.penal survival residuals.survfit survival residuals.survreg survival residuals.survreg.penal survival rev.Surv survival rev.Surv2 survival summary.aareg survival summary.cch survival summary.coxph survival summary.coxph.penal survival summary.ratetable survival summary.pyears survival summary.survexp survival summary.survfit survival summary.survfitms survival summary.survreg survival summary.tmerge survival t.Surv survival t.Surv2 survival tail.Surv survival tail.Surv2 survival text.Surv survival text.Surv2 survival unique.Surv survival vcov.cch survival vcov.concordance survival vcov.coxph survival vcov.survfit survival vcov.survreg survival weights.coxph survival weights.survreg survival xtfrm.Surv survival length.Surv survival names.Surv survival names<-.Surv survival * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [35s/35s] OK * checking Rd files ... [1s/1s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for GNU extensions in Makefiles ... OK * checking include directives in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... [12s/12s] OK * checking PDF version of manual ... [6s/6s] OK * checking HTML version of manual ... [3s/4s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 WARNING, 1 NOTE