downloading reverse dependencies ... downloading AWR.Kinesis_1.7.6.tar.gz ... ok downloading azlogr_0.0.6.tar.gz ... ok downloading binancer_1.2.0.tar.gz ... ok downloading botor_0.4.1.tar.gz ... ok downloading CausalGPS_0.5.0.tar.gz ... ok downloading clockify_0.1.6.tar.gz ... ok downloading colorSpec_1.8-0.tar.gz ... ok downloading CRE_0.2.7.tar.gz ... ok downloading DatastreamR_2.0.4.tar.gz ... ok downloading DIZtools_1.0.2.tar.gz ... ok downloading eider_1.0.0.tar.gz ... ok downloading emayili_0.9.3.tar.gz ... ok downloading fastadi_0.1.2.tar.gz ... ok downloading fbRads_17.0.0.tar.gz ... ok downloading filebin_0.0.6.tar.gz ... ok downloading GPCERF_0.2.4.tar.gz ... ok downloading lambdr_1.2.5.tar.gz ... ok downloading maestro_0.6.2.tar.gz ... ok downloading munsellinterpol_3.2-0.tar.gz ... ok downloading NGCHM_1.0.4.tar.gz ... ok downloading numbat_1.4.2.tar.gz ... ok downloading PACVr_1.0.11.tar.gz ... ok downloading polarzonoid_0.2-0.tar.gz ... ok downloading predictsr_0.1.1.tar.gz ... ok downloading rebib_0.5.0.tar.gz ... ok downloading RelimpPCR_0.3.0.tar.gz ... ok downloading rhino_1.11.0.tar.gz ... ok downloading Rthingsboard_0.2.7.tar.gz ... ok downloading shiny.react_0.4.0.tar.gz ... ok downloading shiny.telemetry_0.3.2.tar.gz ... ok downloading sourcoise_0.6.2.tar.gz ... ok downloading spacesRGB_1.7-0.tar.gz ... ok downloading spacesXYZ_1.6-0.tar.gz ... ok downloading teal_1.0.0.tar.gz ... ok downloading teal.logger_0.4.0.tar.gz ... ok downloading teal.slice_0.7.0.tar.gz ... ok downloading teal.transform_0.7.0.tar.gz ... ok downloading texor_1.6.0.tar.gz ... ok downloading tndata_0.1.0.tar.gz ... ok downloading verdata_1.0.0.tar.gz ... ok downloading zonohedra_0.6-0.tar.gz ... ok downloading dynConfiR_1.0.0.tar.gz ... ok downloading fiery_1.3.0.tar.gz ... ok downloading log4r_0.4.4.tar.gz ... ok downloading osfr_0.2.9.tar.gz ... ok downloading pander_0.6.6.tar.gz ... ok downloading path.chain_1.0.0.tar.gz ... ok downloading shidashi_0.1.6.tar.gz ... ok downloading teal.modules.clinical_0.11.1.tar.gz ... ok downloading teal.modules.general_0.5.0.tar.gz ... ok installing dependencies ‘asciicast’, ‘assertr’, ‘AWR’, ‘bartCause’, ‘botor’, ‘box.linters’, ‘box.lsp’, ‘cld2’, ‘cld3’, ‘cleaR’, ‘colorSpec’, ‘descr’, ‘Ecume’, ‘equatags’, ‘ggmosaic’, ‘gpg’, ‘hahmmr’, ‘insee’, ‘invertiforms’, ‘jinjar’, ‘LCMCR’, ‘logger’, ‘loggit’, ‘LRMF3’, ‘Microsoft365R’, ‘MultiAssayExperiment’, ‘nestcolor’, ‘orientlib’, ‘OxSR’, ‘qs2’, ‘RCircos’, ‘read.gb’, ‘rebib’, ‘relaimpo’, ‘reqres’, ‘rjtools’, ‘rlistings’, ‘rlog’, ‘Rmisc’, ‘roxy.shinylive’, ‘RPushbullet’, ‘RRF’, ‘rsyslog’, ‘scistreer’, ‘semantic.dashboard’, ‘shiny.react’, ‘shiny.semantic’, ‘shinyTree’, ‘shinyvalidate’, ‘slackr’, ‘spacesRGB’, ‘sparkline’, ‘stevedore’, ‘syslognet’, ‘teal’, ‘teal.code’, ‘teal.data’, ‘teal.logger’, ‘teal.reporter’, ‘teal.slice’, ‘teal.transform’, ‘teal.widgets’, ‘telegram’, ‘tern’, ‘tern.gee’, ‘tern.mmrm’, ‘timevis’, ‘tsvio’, ‘vistime’, ‘wCorr’, ‘zonohedra’ Warning: package ‘gpg’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘sparseLRMatrix’, ‘munsellinterpol’, ‘xslt’, ‘katex’, ‘semantic.assets’, ‘rtables.officer’, ‘BiocBaseUtils’, ‘lzstring’, ‘distill’, ‘brotli’, ‘geeasy’, ‘productplots’ begin installing package ‘sparseLRMatrix’ begin installing package ‘xslt’ begin installing package ‘katex’ begin installing package ‘BiocBaseUtils’ begin installing package ‘semantic.assets’ begin installing package ‘lzstring’ begin installing package ‘distill’ begin installing package ‘brotli’ begin installing package ‘geeasy’ begin installing package ‘productplots’ begin installing package ‘RPushbullet’ begin installing package ‘rsyslog’ begin installing package ‘slackr’ begin installing package ‘syslognet’ begin installing package ‘telegram’ begin installing package ‘AWR’ begin installing package ‘wCorr’ begin installing package ‘Ecume’ begin installing package ‘RRF’ begin installing package ‘bartCause’ begin installing package ‘cleaR’ begin installing package ‘cld2’ begin installing package ‘cld3’ begin installing package ‘jinjar’ begin installing package ‘Microsoft365R’ begin installing package ‘LRMF3’ begin installing package ‘stevedore’ begin installing package ‘asciicast’ * installing *source* package ‘syslognet’ ... ** this is package ‘syslognet’ version ‘0.1.2.1’ ** package ‘syslognet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (syslognet) begin installing package ‘tsvio’ * installing *source* package ‘cleaR’ ... ** this is package ‘cleaR’ version ‘0.0.4’ ** package ‘cleaR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cleaR) begin installing package ‘hahmmr’ * installing *source* package ‘BiocBaseUtils’ ... ** this is package ‘BiocBaseUtils’ version ‘1.10.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocBaseUtils) begin installing package ‘scistreer’ * installing *source* package ‘RPushbullet’ ... ** this is package ‘RPushbullet’ version ‘0.3.4’ ** package ‘RPushbullet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RPushbullet) begin installing package ‘read.gb’ * installing *source* package ‘rsyslog’ ... ** this is package ‘rsyslog’ version ‘1.0.3’ ** package ‘rsyslog’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-2) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpiNEXVm/R.INSTALL611f355901d1f/rsyslog/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rsyslog.c -o rsyslog.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o rsyslog.so rsyslog.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpiNEXVm/R.INSTALL611f355901d1f/rsyslog/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rsyslog/00new/rsyslog/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rsyslog) begin installing package ‘RCircos’ * installing *source* package ‘katex’ ... ** this is package ‘katex’ version ‘1.5.0’ ** package ‘katex’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (katex) begin installing package ‘relaimpo’ * installing *source* package ‘semantic.assets’ ... ** this is package ‘semantic.assets’ version ‘1.1.0’ ** package ‘semantic.assets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (semantic.assets) begin installing package ‘Rmisc’ * installing *source* package ‘AWR’ ... ** this is package ‘AWR’ version ‘1.11.189-1’ ** package ‘AWR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AWR) begin installing package ‘box.linters’ * installing *source* package ‘telegram’ ... ** this is package ‘telegram’ version ‘0.7.1’ ** package ‘telegram’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (telegram) begin installing package ‘box.lsp’ * installing *source* package ‘slackr’ ... ** this is package ‘slackr’ version ‘3.3.1’ ** package ‘slackr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (slackr) begin installing package ‘timevis’ * installing *source* package ‘tsvio’ ... ** this is package ‘tsvio’ version ‘1.0.6’ ** package ‘tsvio’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-2) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5OpPyW/R.INSTALL6175b73d500c/tsvio/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dht.c -o dht.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c genindex.c -o genindex.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c getlines.c -o getlines.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tsvlib.c -o tsvlib.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o tsvio.so dht.o genindex.o getlines.o tsvlib.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5OpPyW/R.INSTALL6175b73d500c/tsvio/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-tsvio/00new/tsvio/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tsvio) begin installing package ‘qs2’ * installing *source* package ‘box.lsp’ ... ** this is package ‘box.lsp’ version ‘0.1.3’ ** package ‘box.lsp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (box.lsp) begin installing package ‘insee’ * installing *source* package ‘sparseLRMatrix’ ... ** this is package ‘sparseLRMatrix’ version ‘0.1.0’ ** package ‘sparseLRMatrix’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparseLRMatrix) begin installing package ‘teal.code’ * installing *source* package ‘Rmisc’ ... ** this is package ‘Rmisc’ version ‘1.5.1’ ** package ‘Rmisc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rmisc) begin installing package ‘teal.widgets’ * installing *source* package ‘productplots’ ... ** this is package ‘productplots’ version ‘0.1.1’ ** package ‘productplots’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (productplots) begin installing package ‘shinyvalidate’ * installing *source* package ‘bartCause’ ... ** this is package ‘bartCause’ version ‘1.0-9’ ** package ‘bartCause’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bartCause) begin installing package ‘assertr’ * installing *source* package ‘LRMF3’ ... ** this is package ‘LRMF3’ version ‘0.1.0’ ** package ‘LRMF3’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LRMF3) begin installing package ‘LCMCR’ * installing *source* package ‘asciicast’ ... ** this is package ‘asciicast’ version ‘2.3.1’ ** package ‘asciicast’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-2) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphSRatA/R.INSTALL6122b2ccce003/asciicast/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/processx/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r.c -o r.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/processx/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common.c -o common.o gcc-15 -Wl,--export-dynamic -fopenmp -Wl,-O1 -o rem r.o common.o -L"/home/hornik/tmp/R-d-gcc-15/lib" -lR -lpcre2-8 -ldeflate -lzstd -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/processx/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c client.c -o client.o gcc-15 -shared -L"/home/hornik/tmp/R-d-gcc-15/lib" -Wl,-O1 -o asciicastclient.so \ client.o common.o \ -L"/home/hornik/tmp/R-d-gcc-15/lib" -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphSRatA/R.INSTALL6122b2ccce003/asciicast/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-asciicast/00new/asciicast ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (asciicast) begin installing package ‘orientlib’ * installing *source* package ‘stevedore’ ... ** this is package ‘stevedore’ version ‘0.9.6’ ** package ‘stevedore’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stevedore) begin installing package ‘loggit’ * installing *source* package ‘distill’ ... ** this is package ‘distill’ version ‘1.6’ ** package ‘distill’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (distill) begin installing package ‘rlog’ * installing *source* package ‘lzstring’ ... ** this is package ‘lzstring’ version ‘0.2.0’ ** package ‘lzstring’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-2) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSdaC37/R.INSTALL611e079acd4bf/lzstring/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c code.cpp -o code.o In file included from code.cpp:4: lz-string.h: In function ‘lzstring::string lzstring::decompressFromEncodedURIComponent(const string&)’: lz-string.h:549:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 549 | for (int i = 0; i < keyStrUriSafe.length(); ++i) baseReverseDic[keyStrUriSafe.at(i)] = i; | ~~^~~~~~~~~~~~~~~~~~~~~~~~ lz-string.h: In function ‘lzstring::string lzstring::decompressFromBase64(const string&)’: lz-string.h:574:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 574 | for (int i = 0; i < keyStrBase64.length(); ++i) baseReverseDic[keyStrBase64.at(i)] = i; | ~~^~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o lzstring.so code.o cpp11.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSdaC37/R.INSTALL611e079acd4bf/lzstring/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-lzstring/00new/lzstring/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lzstring) begin installing package ‘descr’ * installing *source* package ‘timevis’ ... ** this is package ‘timevis’ version ‘2.1.0’ ** package ‘timevis’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (timevis) begin installing package ‘rlistings’ * installing *source* package ‘RRF’ ... ** this is package ‘RRF’ version ‘1.9.4.1’ ** package ‘RRF’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-2) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-2) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzKWiuO/R.INSTALL6121b4a5adefb/RRF/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RRF_init.c -o RRF_init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c classTree.c -o classTree.o classTree.c: In function ‘predictClassTree’: classTree.c:454:47: warning: ‘cbestsplit’ may be used uninitialized [-Wmaybe-uninitialized] 454 | k = cbestsplit[(int) x[m + i * mdim] - 1 + k * maxcat] ? | ^ classTree.c:425:22: note: ‘cbestsplit’ was declared here 425 | int m, i, j, k, *cbestsplit; | ^~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c regTree.c -o regTree.o regTree.c: In function ‘predictRegTree’: regTree.c:335:31: warning: ‘cbestsplit’ may be used uninitialized [-Wmaybe-uninitialized] 335 | k = cbestsplit[(int) x[m + i * mdim] - 1 + k * maxcat] ? | ^ regTree.c:308:22: note: ‘cbestsplit’ was declared here 308 | int i, j, k, m, *cbestsplit; | ^~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c regrf.c -o regrf.o regrf.c: In function ‘regRF’: regrf.c:64:9: warning: variable ‘flagReg’ set but not used [-Wunused-but-set-variable] 64 | int flagReg;//new | ^~~~~~~ regrf.c:54:25: warning: variable ‘averrb’ set but not used [-Wunused-but-set-variable] 54 | double errts = 0.0, averrb, meanY, meanYts, varY, varYts, r, xrand, | ^~~~~~ regrf.c:219:25: warning: ‘ytree’ may be used uninitialized [-Wmaybe-uninitialized] 219 | predictRegTree(xts, ntest, mdim, lDaughter + idx, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 | rDaughter + idx, nodestatus + idx, ytree, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 | upper + idx, avnode + idx, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 | mbest + idx, treeSize[j], cat, *maxcat, nodexts); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regrf.c:57:36: note: ‘ytree’ was declared here 57 | double *yb, *xtmp, *xb, *ytr, *ytree, *tgini; | ^~~~~ regrf.c:219:25: warning: ‘nodexts’ may be used uninitialized [-Wmaybe-uninitialized] 219 | predictRegTree(xts, ntest, mdim, lDaughter + idx, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 | rDaughter + idx, nodestatus + idx, ytree, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 | upper + idx, avnode + idx, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 | mbest + idx, treeSize[j], cat, *maxcat, nodexts); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regrf.c:63:30: note: ‘nodexts’ was declared here 63 | int *in, *nind, *nodex, *nodexts; | ^~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rf.c -o rf.o rf.c: In function ‘classRF’: rf.c:110:10: warning: variable ‘tp’ set but not used [-Wunused-but-set-variable] 110 | *tp, *wr; | ^~ rf.c:92:15: warning: variable ‘nimp’ set but not used [-Wunused-but-set-variable] 92 | mimp, nimp, near, nuse, noutall, nrightall, nrightimpall, | ^~~~ rf.c:92:9: warning: variable ‘mimp’ set but not used [-Wunused-but-set-variable] 92 | mimp, nimp, near, nuse, noutall, nrightall, nrightimpall, | ^~~~ rf.c:437:13: warning: ‘oobpair’ may be used uninitialized [-Wmaybe-uninitialized] 437 | computeProximity(prox, oobprox, nodex, jin, oobpair, near); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rf.c:102:43: note: ‘oobpair’ was declared here 102 | *at, *a, *b, *mind, *nind, *jts, *oobpair; | ^~~~~~~ rf.c:385:25: warning: ‘nclts’ may be used uninitialized [-Wmaybe-uninitialized] 385 | TestSetError(countts, jts, clts, outclts, ntest, nclass, jb+1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 | errts + jb*(nclass+1), *labelts, nclts, cut); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rf.c:96:29: note: ‘nclts’ was declared here 96 | *nrightimp, *nout, *nclts, Ntree; | ^~~~~ gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c rfsub.f -o rfsub.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rfutils.c -o rfutils.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o RRF.so RRF_init.o classTree.o regTree.o regrf.o rf.o rfsub.o rfutils.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzKWiuO/R.INSTALL6121b4a5adefb/RRF/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RRF/00new/RRF/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RRF) begin installing package ‘vistime’ * installing *source* package ‘box.linters’ ... ** this is package ‘box.linters’ version ‘0.10.6’ ** package ‘box.linters’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ! The packages {treesitter} and {treesitter.r} are required by namespaced_function_calls(). Please install these packages if you want to use namespaced_function_calls(). They require R version >= 4.3.0. ! The packages {treesitter} and {treesitter.r} are required by namespaced_function_calls(). Please install these packages if you want to use namespaced_function_calls(). They require R version >= 4.3.0. ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (box.linters) begin installing package ‘nestcolor’ * installing *source* package ‘RCircos’ ... ** this is package ‘RCircos’ version ‘1.2.2’ ** package ‘RCircos’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RCircos) begin installing package ‘shinyTree’ * installing *source* package ‘rlog’ ... ** this is package ‘rlog’ version ‘0.1.0’ ** package ‘rlog’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rlog) begin installing package ‘sparkline’ * installing *source* package ‘loggit’ ... ** this is package ‘loggit’ version ‘2.1.1’ ** package ‘loggit’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (loggit) begin installing package ‘logger’ * installing *source* package ‘assertr’ ... ** this is package ‘assertr’ version ‘3.0.1’ ** package ‘assertr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (assertr) begin installing package ‘invertiforms’ * installing *source* package ‘shinyvalidate’ ... ** this is package ‘shinyvalidate’ version ‘0.1.3’ ** package ‘shinyvalidate’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinyvalidate) begin installing package ‘shiny.semantic’ * installing *source* package ‘teal.code’ ... ** this is package ‘teal.code’ version ‘0.7.0’ ** package ‘teal.code’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.code) begin installing package ‘MultiAssayExperiment’ * installing *source* package ‘read.gb’ ... ** this is package ‘read.gb’ version ‘2.2’ ** package ‘read.gb’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (read.gb) begin installing package ‘roxy.shinylive’ * installing *source* package ‘teal.widgets’ ... ** this is package ‘teal.widgets’ version ‘0.5.0’ ** package ‘teal.widgets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.widgets) begin installing package ‘rjtools’ * installing *source* package ‘nestcolor’ ... ** this is package ‘nestcolor’ version ‘0.1.3’ ** package ‘nestcolor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nestcolor) begin installing package ‘ggmosaic’ * installing *source* package ‘sparkline’ ... ** this is package ‘sparkline’ version ‘2.0’ ** package ‘sparkline’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparkline) begin installing package ‘teal.data’ * installing *source* package ‘descr’ ... ** this is package ‘descr’ version ‘1.1.8’ ** package ‘descr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-2) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8Oa3nI/R.INSTALL61fbb46a30290/descr/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c descr.c -o descr.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o descr.so descr.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8Oa3nI/R.INSTALL61fbb46a30290/descr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-descr/00new/descr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (descr) begin installing package ‘tern’ * installing *source* package ‘orientlib’ ... ** this is package ‘orientlib’ version ‘0.10.5’ ** package ‘orientlib’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function from function ‘rotmatrix’ in package ‘orientlib’ Creating a generic function from function ‘rotvector’ in package ‘orientlib’ Creating a generic function from function ‘eulerzyx’ in package ‘orientlib’ Creating a generic function from function ‘quaternion’ in package ‘orientlib’ Creating a generic function from function ‘skewvector’ in package ‘orientlib’ Creating a generic function from function ‘skewmatrix’ in package ‘orientlib’ Creating a generic function from function ‘eulerzxz’ in package ‘orientlib’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (orientlib) * installing *source* package ‘logger’ ... ** this is package ‘logger’ version ‘0.4.1’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (logger) begin installing package ‘botor’ begin installing package ‘spacesRGB’ * installing *source* package ‘shinyTree’ ... ** this is package ‘shinyTree’ version ‘0.3.1’ ** package ‘shinyTree’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinyTree) begin installing package ‘zonohedra’ * installing *source* package ‘roxy.shinylive’ ... ** this is package ‘roxy.shinylive’ version ‘1.0.0’ ** package ‘roxy.shinylive’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (roxy.shinylive) begin installing package ‘colorSpec’ * installing *source* package ‘rlistings’ ... ** this is package ‘rlistings’ version ‘0.2.12’ ** package ‘rlistings’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rlistings) begin installing package ‘shiny.react’ * installing *source* package ‘xslt’ ... ** this is package ‘xslt’ version ‘1.5.1’ ** package ‘xslt’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/libxml2 Using PKG_LIBS=-lexslt -lxslt -lxml2 ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-2) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpvvz9uf/R.INSTALL611cd2139b422/xslt/src' rm -f RcppExports.o xslt.o xslt_init.o xslt.so g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/libxml2 -DSTRICT_R_HEADERS -DSTRICT_R_HEADERS -DR_NO_REMAP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/xml2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/libxml2 -DSTRICT_R_HEADERS -DSTRICT_R_HEADERS -DR_NO_REMAP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/xml2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c xslt.cpp -o xslt.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/include/libxml2 -DSTRICT_R_HEADERS -DSTRICT_R_HEADERS -DR_NO_REMAP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/xml2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c xslt_init.cpp -o xslt_init.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o xslt.so RcppExports.o xslt.o xslt_init.o -lexslt -lxslt -lxml2 -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpvvz9uf/R.INSTALL611cd2139b422/xslt/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-xslt/00new/xslt/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xslt) begin installing package ‘teal.logger’ * installing *source* package ‘geeasy’ ... ** this is package ‘geeasy’ version ‘0.1.3’ ** package ‘geeasy’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geeasy) begin installing package ‘rebib’ * installing *source* package ‘vistime’ ... ** this is package ‘vistime’ version ‘1.2.4’ ** package ‘vistime’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vistime) begin installing package ‘rtables.officer’ * installing *source* package ‘shiny.semantic’ ... ** this is package ‘shiny.semantic’ version ‘0.5.1’ ** package ‘shiny.semantic’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny.semantic) begin installing package ‘equatags’ * installing *source* package ‘invertiforms’ ... ** this is package ‘invertiforms’ version ‘0.1.2’ ** package ‘invertiforms’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘transform’ in package ‘invertiforms’ ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (invertiforms) begin installing package ‘semantic.dashboard’ * installing *source* package ‘shiny.react’ ... ** this is package ‘shiny.react’ version ‘0.4.0’ ** package ‘shiny.react’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny.react) * installing *source* package ‘rjtools’ ... ** this is package ‘rjtools’ version ‘1.0.18’ ** package ‘rjtools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rjtools) * installing *source* package ‘colorSpec’ ... ** this is package ‘colorSpec’ version ‘1.8-0’ ** package ‘colorSpec’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (colorSpec) * installing *source* package ‘rebib’ ... ** this is package ‘rebib’ version ‘0.5.0’ ** package ‘rebib’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rebib) * installing *source* package ‘teal.logger’ ... ** this is package ‘teal.logger’ version ‘0.4.0’ ** package ‘teal.logger’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.logger) * installing *source* package ‘Ecume’ ... ** this is package ‘Ecume’ version ‘0.9.2’ ** package ‘Ecume’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Ecume) * installing *source* package ‘Microsoft365R’ ... ** this is package ‘Microsoft365R’ version ‘2.4.1’ ** package ‘Microsoft365R’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Microsoft365R) * installing *source* package ‘relaimpo’ ... ** this is package ‘relaimpo’ version ‘2.2-7’ ** package ‘relaimpo’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (relaimpo) * installing *source* package ‘spacesRGB’ ... ** this is package ‘spacesRGB’ version ‘1.7-0’ ** package ‘spacesRGB’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spacesRGB) begin installing package ‘munsellinterpol’ * installing *source* package ‘teal.data’ ... ** this is package ‘teal.data’ version ‘0.8.0’ ** package ‘teal.data’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.data) begin installing package ‘teal.slice’ begin installing package ‘teal.transform’ * installing *source* package ‘equatags’ ... ** this is package ‘equatags’ version ‘0.2.2’ ** package ‘equatags’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (equatags) * installing *source* package ‘semantic.dashboard’ ... ** this is package ‘semantic.dashboard’ version ‘0.2.1’ ** package ‘semantic.dashboard’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (semantic.dashboard) * installing *source* package ‘ggmosaic’ ... ** this is package ‘ggmosaic’ version ‘0.3.3’ ** package ‘ggmosaic’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggmosaic) * installing *source* package ‘botor’ ... ** this is package ‘botor’ version ‘0.4.1’ ** package ‘botor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (botor) * installing *source* package ‘munsellinterpol’ ... ** this is package ‘munsellinterpol’ version ‘3.2-0’ ** package ‘munsellinterpol’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (munsellinterpol) begin installing package ‘OxSR’ * installing *source* package ‘rtables.officer’ ... ** this is package ‘rtables.officer’ version ‘0.1.0’ ** package ‘rtables.officer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rtables.officer) begin installing package ‘teal.reporter’ * installing *source* package ‘cld2’ ... ** this is package ‘cld2’ version ‘1.2.6’ ** package ‘cld2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-2) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpMBS4Qg/R.INSTALL612202b172ce7/cld2/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapper.cpp -o wrapper.o wrapper.cpp: In function ‘Rcpp::CharacterVector detect_language_cc(Rcpp::CharacterVector, bool, bool)’: wrapper.cpp:12:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 12 | for(size_t i = 0; i < input.length(); i++){ | ~~^~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cldutil.cc -o libcld2/internal/cldutil.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cldutil_shared.cc -o libcld2/internal/cldutil_shared.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/compact_lang_det.cc -o libcld2/internal/compact_lang_det.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/compact_lang_det_hint_code.cc -o libcld2/internal/compact_lang_det_hint_code.o libcld2/internal/compact_lang_det_hint_code.cc: In function ‘std::string CLD2::TrimCLDLangTagsHint(const std::string&)’: libcld2/internal/compact_lang_det_hint_code.cc:1060:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 1060 | if (comma == string::npos) {comma = langtags.size();} // fake trailing comma | ~~~~~~^~~~~~~~~~~~~~~ libcld2/internal/compact_lang_det_hint_code.cc: In function ‘void CLD2::SetCLDLangTagsHint(const std::string&, CLDLangPriors*)’: libcld2/internal/compact_lang_det_hint_code.cc:1403:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 1403 | if (comma == string::npos) {comma = langtags.size();} // fake trailing comma | ~~~~~~^~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/compact_lang_det_impl.cc -o libcld2/internal/compact_lang_det_impl.o libcld2/internal/compact_lang_det_impl.cc: In function ‘void CLD2::CalcSummaryLang(DocTote*, int, const int*, const Language*, const int*, Language*, bool*, bool, bool, int)’: libcld2/internal/compact_lang_det_impl.cc:1455:7: warning: unused variable ‘plang_second’ [-Wunused-variable] 1455 | int plang_second = PerScriptNumber(ULScript_Latin, language3[active_slot[1]]); | ^~~~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc: In function ‘CLD2::Language CLD2::DetectLanguageSummaryV2(const char*, int, bool, const CLDHints*, bool, int, Language, Language*, int*, double*, ResultChunkVector*, int*, bool*)’: libcld2/internal/compact_lang_det_impl.cc:1849:14: warning: unused variable ‘ulscript’ [-Wunused-variable] 1849 | ULScript ulscript = scriptspan.ulscript; | ^~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1788:7: warning: unused variable ‘next_other_tote’ [-Wunused-variable] 1788 | int next_other_tote = 2; | ^~~~~~~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1789:7: warning: unused variable ‘tote_num’ [-Wunused-variable] 1789 | int tote_num = 0; | ^~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1793:8: warning: unused variable ‘tote_seen’ [-Wunused-variable] 1793 | bool tote_seen[4] = {false, false, false, false}; | ^~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1794:7: warning: unused variable ‘tote_grams’ [-Wunused-variable] 1794 | int tote_grams[4] = {0, 0, 0, 0}; // Number in partial chunk | ^~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1795:12: warning: unused variable ‘tote_script’ [-Wunused-variable] 1795 | ULScript tote_script[4] = | ^~~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1814:7: warning: unused variable ‘advance_by’ [-Wunused-variable] 1814 | int advance_by = 2; // Advance 2 bytes | ^~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1815:7: warning: unused variable ‘advance_limit’ [-Wunused-variable] 1815 | int advance_limit = textlimit >> 3; // For first 1/8 of max document | ^~~~~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1817:7: warning: variable ‘initial_word_span’ set but not used [-Wunused-but-set-variable] 1817 | int initial_word_span = kDefaultWordSpan; | ^~~~~~~~~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1828:7: warning: unused variable ‘chunksizeunis’ [-Wunused-variable] 1828 | int chunksizeunis = (chunksizequads * 5) >> 1; | ^~~~~~~~~~~~~ libcld2/internal/compact_lang_det_impl.cc:1832:7: warning: unused variable ‘spantooshortlimit’ [-Wunused-variable] 1832 | int spantooshortlimit = kShortSpanThresh; | ^~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/debug.cc -o libcld2/internal/debug.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/fixunicodevalue.cc -o libcld2/internal/fixunicodevalue.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/generated_entities.cc -o libcld2/internal/generated_entities.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/generated_language.cc -o libcld2/internal/generated_language.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/generated_ulscript.cc -o libcld2/internal/generated_ulscript.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/getonescriptspan.cc -o libcld2/internal/getonescriptspan.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/lang_script.cc -o libcld2/internal/lang_script.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/offsetmap.cc -o libcld2/internal/offsetmap.o libcld2/internal/offsetmap.cc: In member function ‘void CLD2::OffsetMap::Printmap(const char*)’: libcld2/internal/offsetmap.cc:84:43: warning: array subscript has type ‘char’ [-Wchar-subscripts] 84 | fprintf(fout, "%c%02d ", "&=+-"[OpPart(diffs_[i])], LenPart(diffs_[i])); | ~~~~~~^~~~~~~~~~~ libcld2/internal/offsetmap.cc: In member function ‘void CLD2::OffsetMap::DumpString()’: libcld2/internal/offsetmap.cc:210:45: warning: array subscript has type ‘char’ [-Wchar-subscripts] 210 | fprintf(stderr, "%c%02d ", "&=+-"[OpPart(diffs_[i])], LenPart(diffs_[i])); | ~~~~~~^~~~~~~~~~~ libcld2/internal/offsetmap.cc: In member function ‘bool CLD2::OffsetMap::MoveLeft()’: libcld2/internal/offsetmap.cc:404:8: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable] 404 | bool retval = true; | ^~~~~~ libcld2/internal/offsetmap.cc: In static member function ‘static bool CLD2::OffsetMap::CopyInserts(CLD2::OffsetMap*, CLD2::OffsetMap*)’: libcld2/internal/offsetmap.cc:484:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 484 | while (ok && (source->next_diff_sub_ != source->diffs_.size())) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ libcld2/internal/offsetmap.cc: In static member function ‘static bool CLD2::OffsetMap::CopyDeletes(CLD2::OffsetMap*, CLD2::OffsetMap*)’: libcld2/internal/offsetmap.cc:498:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 498 | while (ok && (source->next_diff_sub_ != source->diffs_.size())) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/scoreonescriptspan.cc -o libcld2/internal/scoreonescriptspan.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/tote.cc -o libcld2/internal/tote.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/utf8statetable.cc -o libcld2/internal/utf8statetable.o libcld2/internal/utf8statetable.cc: In function ‘int CLD2::UTF8GenericReplaceInternalTwoByte(const UTF8ReplaceObj_2*, const StringPiece&, StringPiece&, bool, int*, int*, int*, OffsetMap*)’: libcld2/internal/utf8statetable.cc:905:7: warning: variable ‘src_lll’ set but not used [-Wunused-but-set-variable] 905 | int src_lll = srclimit - src; | ^~~~~~~ libcld2/internal/utf8statetable.cc:906:7: warning: variable ‘dst_lll’ set but not used [-Wunused-but-set-variable] 906 | int dst_lll = dstlimit - dst; | ^~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cld_generated_cjk_uni_prop_80.cc -o libcld2/internal/cld_generated_cjk_uni_prop_80.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cld2_generated_cjk_compatible.cc -o libcld2/internal/cld2_generated_cjk_compatible.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cld_generated_cjk_delta_bi_4.cc -o libcld2/internal/cld_generated_cjk_delta_bi_4.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/generated_distinct_bi_0.cc -o libcld2/internal/generated_distinct_bi_0.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cld2_generated_quadchrome_2.cc -o libcld2/internal/cld2_generated_quadchrome_2.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cld2_generated_deltaoctachrome.cc -o libcld2/internal/cld2_generated_deltaoctachrome.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cld2_generated_distinctoctachrome.cc -o libcld2/internal/cld2_generated_distinctoctachrome.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld2/internal/cld_generated_score_quad_octa_2.cc -o libcld2/internal/cld_generated_score_quad_octa_2.o ar rcs libcld2/libstatcld2.a libcld2/internal/cldutil.o libcld2/internal/cldutil_shared.o libcld2/internal/compact_lang_det.o libcld2/internal/compact_lang_det_hint_code.o libcld2/internal/compact_lang_det_impl.o libcld2/internal/debug.o libcld2/internal/fixunicodevalue.o libcld2/internal/generated_entities.o libcld2/internal/generated_language.o libcld2/internal/generated_ulscript.o libcld2/internal/getonescriptspan.o libcld2/internal/lang_script.o libcld2/internal/offsetmap.o libcld2/internal/scoreonescriptspan.o libcld2/internal/tote.o libcld2/internal/utf8statetable.o libcld2/internal/cld_generated_cjk_uni_prop_80.o libcld2/internal/cld2_generated_cjk_compatible.o libcld2/internal/cld_generated_cjk_delta_bi_4.o libcld2/internal/generated_distinct_bi_0.o libcld2/internal/cld2_generated_quadchrome_2.o libcld2/internal/cld2_generated_deltaoctachrome.o libcld2/internal/cld2_generated_distinctoctachrome.o libcld2/internal/cld_generated_score_quad_octa_2.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o cld2.so RcppExports.o wrapper.o -Llibcld2 -lstatcld2 -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpMBS4Qg/R.INSTALL612202b172ce7/cld2/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-cld2/00new/cld2/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cld2) * installing *source* package ‘LCMCR’ ... ** this is package ‘LCMCR’ version ‘0.4.14’ ** package ‘LCMCR’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-15 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-15 accepts -g... yes checking for gcc-15 option to enable C11 features... none needed checking for gsl-config... /usr/bin/gsl-config checking for GSL - version >= 2.5... yes checking for inline... inline configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-2) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpvykb8V/R.INSTALL61d7f69fb3344/LCMCR/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c R_Interface/registration.cpp -o R_Interface/registration.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c R_Interface/R_Lcm_CR.cpp -o R_Interface/R_Lcm_CR.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c NPLCM_CR_Basic_Freq.cpp -o NPLCM_CR_Basic_Freq.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c daniel2/R_Environ_Simple.cpp -o daniel2/R_Environ_Simple.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c daniel2/CChain.cpp -o daniel2/CChain.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c daniel2/CParam.cpp -o daniel2/CParam.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c daniel2/CData.cpp -o daniel2/CData.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c daniel2/CParam_generic.cpp -o daniel2/CParam_generic.o daniel2/CParam_generic.cpp:55: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 55 | #pragma omp critical g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c daniel2/CVariable_Container.cpp -o daniel2/CVariable_Container.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c daniel2/dan_array_utils.cpp -o daniel2/dan_array_utils.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o LCMCR.so R_Interface/registration.o R_Interface/R_Lcm_CR.o ./NPLCM_CR_Basic_Freq.o daniel2/R_Environ_Simple.o daniel2/CChain.o daniel2/CParam.o daniel2/CData.o daniel2/CParam_generic.o daniel2/CVariable_Container.o daniel2/dan_array_utils.o -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpvykb8V/R.INSTALL61d7f69fb3344/LCMCR/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-LCMCR/00new/LCMCR/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LCMCR) * installing *source* package ‘zonohedra’ ... ** this is package ‘zonohedra’ version ‘0.6-0’ ** package ‘zonohedra’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-2) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-2) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnQNXT2/R.INSTALL62509558911a4/zonohedra/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c area.c -o area.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c clipping.c -o clipping.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c collapse.c -o collapse.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dbl_dig.c -o dbl_dig.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c dupAtomMatHash.cpp -o dupAtomMatHash.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c flVecMap.cpp -o flVecMap.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c linking.c -o linking.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c linking2.c -o linking2.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c linking3.c -o linking3.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matdat.c -o matdat.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matroid.c -o matroid.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pgram.c -o pgram.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c trans2.c -o trans2.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c transitions.c -o transitions.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c zonohedron.c -o zonohedron.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o zonohedra.so area.o clipping.o collapse.o dbl_dig.o dupAtomMatHash.o flVecMap.o init.o linking.o linking2.o linking3.o matdat.o matroid.o pgram.o trans2.o transitions.o utils.o zonohedron.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnQNXT2/R.INSTALL62509558911a4/zonohedra/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-zonohedra/00new/zonohedra/libs ** R ** data *** moving datasets to lazyload DB ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (zonohedra) * installing *source* package ‘teal.transform’ ... ** this is package ‘teal.transform’ version ‘0.7.0’ ** package ‘teal.transform’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.transform) * installing *source* package ‘OxSR’ ... ** this is package ‘OxSR’ version ‘1.0.1’ ** package ‘OxSR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OxSR) * installing *source* package ‘brotli’ ... ** this is package ‘brotli’ version ‘1.3.2’ ** package ‘brotli’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-2) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4xfzfg/R.INSTALL611de4d97fbcc/brotli/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wrapper.c -o wrapper.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/backward_references.c -o enc/backward_references.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/bit_cost.c -o enc/bit_cost.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/block_splitter.c -o enc/block_splitter.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/brotli_bit_stream.c -o enc/brotli_bit_stream.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/cluster.c -o enc/cluster.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/compress_fragment_two_pass.c -o enc/compress_fragment_two_pass.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/compress_fragment.c -o enc/compress_fragment.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/encode.c -o enc/encode.o enc/encode.c:1473:20: warning: argument 5 of type ‘const uint8_t *’ {aka ‘const unsigned char *’} declared as a pointer [-Wvla-parameter] 1473 | const uint8_t* input_buffer, size_t* encoded_size, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from enc/encode.c:9: include/brotli/encode.h:314:19: note: previously declared as a variable length array ‘const uint8_t[input_size]’ {aka ‘const unsigned char[input_size]’} 314 | const uint8_t input_buffer[BROTLI_ARRAY_PARAM(input_size)], | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ enc/encode.c:1474:14: warning: argument 7 of type ‘uint8_t *’ {aka ‘unsigned char *’} declared as a pointer [-Wvla-parameter] 1474 | uint8_t* encoded_buffer) { | ~~~~~~~~~^~~~~~~~~~~~~~ include/brotli/encode.h:316:13: note: previously declared as a variable length array ‘uint8_t[*encoded_size]’ {aka ‘unsigned char[*encoded_size]’} 316 | uint8_t encoded_buffer[BROTLI_ARRAY_PARAM(*encoded_size)]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/entropy_encode.c -o enc/entropy_encode.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/histogram.c -o enc/histogram.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/literal_cost.c -o enc/literal_cost.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/memory.c -o enc/memory.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/metablock.c -o enc/metablock.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/static_dict.c -o enc/static_dict.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/utf8_util.c -o enc/utf8_util.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dec/bit_reader.c -o dec/bit_reader.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dec/huffman.c -o dec/huffman.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dec/state.c -o dec/state.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dec/decode.c -o dec/decode.o dec/decode.c:2036:41: warning: argument 2 of type ‘const uint8_t *’ {aka ‘const unsigned char *’} declared as a pointer [-Wvla-parameter] 2036 | size_t encoded_size, const uint8_t* encoded_buffer, size_t* decoded_size, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from dec/decode.c:7: include/brotli/decode.h:204:19: note: previously declared as a variable length array ‘const uint8_t[encoded_size]’ {aka ‘const unsigned char[encoded_size]’} 204 | const uint8_t encoded_buffer[BROTLI_ARRAY_PARAM(encoded_size)], | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dec/decode.c:2037:14: warning: argument 4 of type ‘uint8_t *’ {aka ‘unsigned char *’} declared as a pointer [-Wvla-parameter] 2037 | uint8_t* decoded_buffer) { | ~~~~~~~~~^~~~~~~~~~~~~~ include/brotli/decode.h:206:13: note: previously declared as a variable length array ‘uint8_t[*decoded_size]’ {aka ‘unsigned char[*decoded_size]’} 206 | uint8_t decoded_buffer[BROTLI_ARRAY_PARAM(*decoded_size)]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common/dictionary.c -o common/dictionary.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/backward_references_hq.c -o enc/backward_references_hq.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/dictionary_hash.c -o enc/dictionary_hash.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common/transform.c -o common/transform.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/encoder_dict.c -o enc/encoder_dict.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common/platform.c -o common/platform.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common/context.c -o common/context.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common/constants.c -o common/constants.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/command.c -o enc/command.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c enc/fast_log.c -o enc/fast_log.o ar rcs enc/libstatbrotli.a enc/backward_references.o enc/bit_cost.o enc/block_splitter.o enc/brotli_bit_stream.o enc/cluster.o enc/compress_fragment_two_pass.o enc/compress_fragment.o enc/encode.o enc/entropy_encode.o enc/histogram.o enc/literal_cost.o enc/memory.o enc/metablock.o enc/static_dict.o enc/utf8_util.o dec/bit_reader.o dec/huffman.o dec/state.o dec/decode.o common/dictionary.o enc/backward_references_hq.o enc/dictionary_hash.o common/transform.o enc/encoder_dict.o common/platform.o common/context.o common/constants.o enc/command.o enc/fast_log.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o brotli.so wrapper.o -Lenc -lstatbrotli -L/home/hornik/tmp/R-d-gcc-15/lib -lR gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DBROTLI_BUILD_PORTABLE -Iinclude -include config.h -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tools/brotli.c -o tools/brotli.o mkdir -p ../inst/bin g++-15 -std=gnu++17 -o ../inst/bin/bro tools/brotli.o -Lenc -lstatbrotli -Wl,-O1 rm -f enc/backward_references.o enc/bit_cost.o enc/block_splitter.o enc/brotli_bit_stream.o enc/cluster.o enc/compress_fragment_two_pass.o enc/compress_fragment.o enc/encode.o enc/entropy_encode.o enc/histogram.o enc/literal_cost.o enc/memory.o enc/metablock.o enc/static_dict.o enc/utf8_util.o dec/bit_reader.o dec/huffman.o dec/state.o dec/decode.o common/dictionary.o enc/backward_references_hq.o enc/dictionary_hash.o common/transform.o enc/encoder_dict.o common/platform.o common/context.o common/constants.o enc/command.o enc/fast_log.o ../inst/bin/bro enc/libstatbrotli.a tools/brotli.o make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4xfzfg/R.INSTALL611de4d97fbcc/brotli/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-brotli/00new/brotli/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (brotli) begin installing package ‘reqres’ * installing *source* package ‘teal.reporter’ ... ** this is package ‘teal.reporter’ version ‘0.5.0’ ** package ‘teal.reporter’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.reporter) * installing *source* package ‘scistreer’ ... ** this is package ‘scistreer’ version ‘1.2.0’ ** package ‘scistreer’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-2) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPM6ybQ/R.INSTALL617c72c7bc478/scistreer/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"../inst/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from RcppExports.cpp:4: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"../inst/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c scistreer.cpp -o scistreer.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from scistreer.cpp:3: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ scistreer.cpp: In function ‘std::vector > > allChildrenCPP(arma::Mat)’: scistreer.cpp:22:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 22 | for(int i = 0; i reorder_rows(arma::Mat, arma::Col)’: scistreer.cpp:52:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 52 | for (int i = 0; i < y.n_elem; ++i) { | ~~^~~~~~~~~~ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o scistreer.so RcppExports.o scistreer.o -lpthread -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPM6ybQ/R.INSTALL617c72c7bc478/scistreer/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-scistreer/00new/scistreer/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scistreer) * installing *source* package ‘teal.slice’ ... ** this is package ‘teal.slice’ version ‘0.7.0’ ** package ‘teal.slice’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.slice) begin installing package ‘teal’ * installing *source* package ‘tern’ ... ** this is package ‘tern’ version ‘0.9.9’ ** package ‘tern’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tern) begin installing package ‘tern.mmrm’ begin installing package ‘tern.gee’ * installing *source* package ‘qs2’ ... ** this is package ‘qs2’ version ‘0.1.5’ ** package ‘qs2’ successfully unpacked and MD5 sums checked ** using staged installation checking for pkg-config... /usr/bin/pkg-config checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++-15 -std=gnu++17 accepts -g... yes C++ compiler: g++-15 -std=gnu++17 zstd 1.5.7 library detected -- skipping zstd compilation Fixed blocksize Not using TBB configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-2) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprNCClH/R.INSTALL619df230db609/qs2/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DRCPP_NO_SUGAR -I../inst/include -I. -DIS_UTF8_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stringfish/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_PARALLEL_USE_TBB=0 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DRCPP_NO_SUGAR -I../inst/include -I. -DIS_UTF8_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/stringfish/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_PARALLEL_USE_TBB=0 -fpic -g -O2 -Wall -pedantic -mtune=native -c qx_functions.cpp -o qx_functions.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o qs2.so RcppExports.o qx_functions.o -L. -lzstd -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprNCClH/R.INSTALL619df230db609/qs2/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-qs2/00new/qs2/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qs2) * installing *source* package ‘reqres’ ... ** this is package ‘reqres’ version ‘1.0.0’ ** package ‘reqres’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-2) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEVtlqx/R.INSTALL62cdf24e4ceaf/reqres/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c reqres.c -o reqres.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o reqres.so reqres.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEVtlqx/R.INSTALL62cdf24e4ceaf/reqres/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-reqres/00new/reqres/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reqres) * installing *source* package ‘wCorr’ ... ** this is package ‘wCorr’ version ‘1.9.8’ ** package ‘wCorr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-2) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpr0BWMI/R.INSTALL612125c3a36e0/wCorr/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from RcppExports.cpp:4: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c contCorrHelpers.cpp -o contCorrHelpers.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from contCorrHelpers.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c helpers.cpp -o helpers.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from helpers.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c polycHelpers.cpp -o polycHelpers.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from polycHelpers.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpparma_hello_world.cpp -o rcpparma_hello_world.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from rcpparma_hello_world.cpp:5: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o wCorr.so RcppExports.o contCorrHelpers.o helpers.o polycHelpers.o rcpparma_hello_world.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpr0BWMI/R.INSTALL612125c3a36e0/wCorr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-wCorr/00new/wCorr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (wCorr) * installing *source* package ‘teal’ ... ** this is package ‘teal’ version ‘1.0.0’ ** package ‘teal’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal) * installing *source* package ‘tern.gee’ ... ** this is package ‘tern.gee’ version ‘0.1.5’ ** package ‘tern.gee’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tern.gee) * installing *source* package ‘MultiAssayExperiment’ ... ** this is package ‘MultiAssayExperiment’ version ‘1.34.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MultiAssayExperiment) * installing *source* package ‘hahmmr’ ... ** this is package ‘hahmmr’ version ‘1.0.0’ ** package ‘hahmmr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-2) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpu2D88B/R.INSTALL617b8497bc480/hahmmr/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"../inst/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from RcppExports.cpp:4: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"../inst/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c bbinom.cpp -o bbinom.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"../inst/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c hmm.cpp -o hmm.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from hmm.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"../inst/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c misc.cpp -o misc.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"../inst/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c mle.cpp -o mle.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29, from mle.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.’ 71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.") | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/roptim/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I"../inst/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c poilog.cpp -o poilog.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o hahmmr.so RcppExports.o bbinom.o hmm.o misc.o mle.o poilog.o -lpthread -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpu2D88B/R.INSTALL617b8497bc480/hahmmr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-hahmmr/00new/hahmmr/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hahmmr) * installing *source* package ‘cld3’ ... ** this is package ‘cld3’ version ‘1.6.1’ ** package ‘cld3’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS= Using PKG_LIBS=-lprotobuf Found C++17 compiler: g++-15 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native Using libprotoc 3.21.12 from /usr/bin/protoc protoc version libprotoc 3.21.12 matches libproto version 3.21.12 ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-2) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDwyj4t/R.INSTALL612222da6ca99/cld3/src' rm -f cld3.so RcppExports.o wrapper.o libcld3/base.o libcld3/embedding_feature_extractor.o libcld3/embedding_network.o libcld3/feature_extractor.o libcld3/feature_types.o libcld3/fml_parser.o libcld3/language_identifier_features.o libcld3/lang_id_nn_params.o libcld3/nnet_language_identifier.o libcld3/registry.o libcld3/relevant_script_feature.o libcld3/sentence_features.o libcld3/script_span/fixunicodevalue.o libcld3/script_span/generated_entities.o libcld3/script_span/generated_ulscript.o libcld3/script_span/getonescriptspan.o libcld3/script_span/offsetmap.o libcld3/script_span/text_processing.o libcld3/script_span/utf8statetable.o libcld3/task_context.o libcld3/task_context_params.o libcld3/unicodetext.o libcld3/utils.o libcld3/workspace.o cld_3/protos/feature_extractor.pb.o cld_3/protos/sentence.pb.o cld_3/protos/task_spec.pb.o libcld3/libstatcld3.a g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapper.cpp -o wrapper.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/base.cc -o libcld3/base.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/embedding_feature_extractor.cc -o libcld3/embedding_feature_extractor.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/embedding_network.cc -o libcld3/embedding_network.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/feature_extractor.cc -o libcld3/feature_extractor.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/feature_types.cc -o libcld3/feature_types.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/fml_parser.cc -o libcld3/fml_parser.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/language_identifier_features.cc -o libcld3/language_identifier_features.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/lang_id_nn_params.cc -o libcld3/lang_id_nn_params.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/nnet_language_identifier.cc -o libcld3/nnet_language_identifier.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/registry.cc -o libcld3/registry.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/relevant_script_feature.cc -o libcld3/relevant_script_feature.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/sentence_features.cc -o libcld3/sentence_features.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/script_span/fixunicodevalue.cc -o libcld3/script_span/fixunicodevalue.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/script_span/generated_entities.cc -o libcld3/script_span/generated_entities.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/script_span/generated_ulscript.cc -o libcld3/script_span/generated_ulscript.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/script_span/getonescriptspan.cc -o libcld3/script_span/getonescriptspan.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/script_span/offsetmap.cc -o libcld3/script_span/offsetmap.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/script_span/text_processing.cc -o libcld3/script_span/text_processing.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/script_span/utf8statetable.cc -o libcld3/script_span/utf8statetable.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/task_context.cc -o libcld3/task_context.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/task_context_params.cc -o libcld3/task_context_params.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/unicodetext.cc -o libcld3/unicodetext.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/utils.cc -o libcld3/utils.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libcld3/workspace.cc -o libcld3/workspace.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cld_3/protos/feature_extractor.pb.cc -o cld_3/protos/feature_extractor.pb.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cld_3/protos/sentence.pb.cc -o cld_3/protos/sentence.pb.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cld_3/protos/task_spec.pb.cc -o cld_3/protos/task_spec.pb.o ar rcs libcld3/libstatcld3.a libcld3/base.o libcld3/embedding_feature_extractor.o libcld3/embedding_network.o libcld3/feature_extractor.o libcld3/feature_types.o libcld3/fml_parser.o libcld3/language_identifier_features.o libcld3/lang_id_nn_params.o libcld3/nnet_language_identifier.o libcld3/registry.o libcld3/relevant_script_feature.o libcld3/sentence_features.o libcld3/script_span/fixunicodevalue.o libcld3/script_span/generated_entities.o libcld3/script_span/generated_ulscript.o libcld3/script_span/getonescriptspan.o libcld3/script_span/offsetmap.o libcld3/script_span/text_processing.o libcld3/script_span/utf8statetable.o libcld3/task_context.o libcld3/task_context_params.o libcld3/unicodetext.o libcld3/utils.o libcld3/workspace.o cld_3/protos/feature_extractor.pb.o cld_3/protos/sentence.pb.o cld_3/protos/task_spec.pb.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o cld3.so RcppExports.o wrapper.o -Llibcld3 -lstatcld3 -lprotobuf -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDwyj4t/R.INSTALL612222da6ca99/cld3/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-cld3/00new/cld3/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cld3) * installing *source* package ‘tern.mmrm’ ... ** this is package ‘tern.mmrm’ version ‘0.3.3’ ** package ‘tern.mmrm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tern.mmrm) * installing *source* package ‘jinjar’ ... ** this is package ‘jinjar’ version ‘0.3.2’ ** package ‘jinjar’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-2) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxZRnRc/R.INSTALL6122977a4f835/jinjar/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./inja -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c condition.cpp -o condition.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./inja -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./inja -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c loader.cpp -o loader.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./inja -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c render.cpp -o render.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./inja -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c template.cpp -o template.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o jinjar.so condition.o cpp11.o loader.o render.o template.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxZRnRc/R.INSTALL6122977a4f835/jinjar/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-jinjar/00new/jinjar/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jinjar) * installing *source* package ‘insee’ ... ** this is package ‘insee’ version ‘1.1.7’ ** package ‘insee’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (insee) checking logger_0.4.1.tar.gz ... checking AWR.Kinesis_1.7.6.tar.gz ... checking binancer_1.2.0.tar.gz ... checking azlogr_0.0.6.tar.gz ... checking botor_0.4.1.tar.gz ... checking CausalGPS_0.5.0.tar.gz ... checking clockify_0.1.6.tar.gz ... checking colorSpec_1.8-0.tar.gz ... checking CRE_0.2.7.tar.gz ... checking DatastreamR_2.0.4.tar.gz ... checking DIZtools_1.0.2.tar.gz ... checking eider_1.0.0.tar.gz ... checking emayili_0.9.3.tar.gz ... checking fastadi_0.1.2.tar.gz ... checking fbRads_17.0.0.tar.gz ... checking filebin_0.0.6.tar.gz ... checking GPCERF_0.2.4.tar.gz ... checking lambdr_1.2.5.tar.gz ... checking maestro_0.6.2.tar.gz ... checking munsellinterpol_3.2-0.tar.gz ... checking NGCHM_1.0.4.tar.gz ... checking numbat_1.4.2.tar.gz ... checking PACVr_1.0.11.tar.gz ... checking polarzonoid_0.2-0.tar.gz ... checking predictsr_0.1.1.tar.gz ... checking rebib_0.5.0.tar.gz ... checking RelimpPCR_0.3.0.tar.gz ... checking rhino_1.11.0.tar.gz ... checking sourcoise_0.6.2.tar.gz ... checking shiny.telemetry_0.3.2.tar.gz ... checking texor_1.6.0.tar.gz ... checking shiny.react_0.4.0.tar.gz ... checking teal.transform_0.7.0.tar.gz ... checking dynConfiR_1.0.0.tar.gz ... checking fiery_1.3.0.tar.gz ... checking osfr_0.2.9.tar.gz ... checking teal.modules.general_0.5.0.tar.gz ... checking verdata_1.0.0.tar.gz ... checking spacesRGB_1.7-0.tar.gz ... checking teal_1.0.0.tar.gz ... checking tndata_0.1.0.tar.gz ... checking Rthingsboard_0.2.7.tar.gz ... checking shidashi_0.1.6.tar.gz ... checking teal.slice_0.7.0.tar.gz ... checking pander_0.6.6.tar.gz ... checking spacesXYZ_1.6-0.tar.gz ... checking teal.modules.clinical_0.11.1.tar.gz ... checking teal.logger_0.4.0.tar.gz ... checking zonohedra_0.6-0.tar.gz ... checking path.chain_1.0.0.tar.gz ... checking log4r_0.4.4.tar.gz ... Depends: Package: logger Depends: R (>= 4.0.0) Imports: utils Timings: user system elapsed logger 74.752 7.569 79.883 Results: Check status summary: ERROR NOTE OK Source packages 0 0 1 Reverse depends 6 1 43 Check results summary: logger ... OK rdepends_AWR.Kinesis ... OK rdepends_azlogr ... ERROR * checking examples ... [0s/0s] ERROR * checking tests ... [2s/2s] ERROR * checking re-building of vignette outputs ... [1s/1s] ERROR rdepends_binancer ... OK rdepends_botor ... OK rdepends_CausalGPS ... OK rdepends_clockify ... OK rdepends_colorSpec ... ERROR * checking examples ... [4s/4s] ERROR * checking tests ... [14s/14s] ERROR * checking re-building of vignette outputs ... [63s/64s] ERROR rdepends_CRE ... OK rdepends_DatastreamR ... OK rdepends_DIZtools ... OK rdepends_dynConfiR ... OK rdepends_eider ... OK rdepends_emayili ... OK rdepends_fastadi ... OK rdepends_fbRads ... NOTE * checking Rd files ... [1s/1s] NOTE rdepends_fiery ... OK rdepends_filebin ... OK rdepends_GPCERF ... OK rdepends_lambdr ... OK rdepends_log4r ... OK rdepends_maestro ... OK rdepends_munsellinterpol ... ERROR * checking tests ... [97s/97s] ERROR rdepends_NGCHM ... OK rdepends_numbat ... OK rdepends_osfr ... OK rdepends_PACVr ... OK rdepends_pander ... OK rdepends_path.chain ... OK rdepends_polarzonoid ... OK rdepends_predictsr ... OK rdepends_rebib ... OK rdepends_RelimpPCR ... OK rdepends_rhino ... OK rdepends_Rthingsboard ... OK rdepends_shidashi ... OK rdepends_shiny.react ... OK rdepends_shiny.telemetry ... OK rdepends_sourcoise ... OK rdepends_spacesRGB ... ERROR * checking examples ... [0s/0s] ERROR * checking tests ... [8s/8s] ERROR rdepends_spacesXYZ ... ERROR * checking tests ... [2s/2s] ERROR rdepends_teal.logger ... OK rdepends_teal.modules.clinical ... OK rdepends_teal.modules.general ... OK rdepends_teal ... OK rdepends_teal.slice ... OK rdepends_teal.transform ... OK rdepends_texor ... OK rdepends_tndata ... OK rdepends_verdata ... OK rdepends_zonohedra ... ERROR * checking examples ... [5s/5s] ERROR * checking tests ... [59s/59s] ERROR Check results changes: Package: AWR.Kinesis Check: CRAN incoming feasibility Old result: NOTE Package: azlogr Check: examples New result: ERROR Package: azlogr Check: re-building of vignette outputs New result: ERROR Package: azlogr Check: tests New result: ERROR Package: CausalGPS Check: DESCRIPTION meta-information Old result: NOTE New result: OK Package: colorSpec Check: examples New result: ERROR Package: colorSpec Check: re-building of vignette outputs New result: ERROR Package: colorSpec Check: tests New result: ERROR Package: GPCERF Check: DESCRIPTION meta-information Old result: NOTE New result: OK Package: munsellinterpol Check: tests New result: ERROR Package: osfr Check: CRAN incoming feasibility Old result: NOTE Package: RelimpPCR Check: CRAN incoming feasibility Old result: NOTE Package: spacesRGB Check: examples New result: ERROR Package: spacesRGB Check: tests New result: ERROR Package: spacesXYZ Check: tests New result: ERROR Package: zonohedra Check: examples New result: ERROR Package: zonohedra Check: tests New result: ERROR