* installing *source* package ‘localScore’ ...
** this is package ‘localScore’ version ‘2.0.2’
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 19.1.7 (3)’
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c RcppExports.cpp -o RcppExports.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c function_wrapper.cpp -o function_wrapper.o
function_wrapper.cpp:142:8: warning: unused variable 'checkOK' [-Wunused-variable]
  142 |   bool checkOK = checkKDMparameters(local_score, sequence_length, score_probabilities, sequence_min_, sequence_max_, score_values_) ;
      |        ^~~~~~~
function_wrapper.cpp:203:5: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation]
  203 |     double p = calcul_karlin(local_score, as<std::vector<double>>(score_probabilities), as<int>(sequence_max_), -as<int>(sequence_min_), (long)sequence_length);
      |     ^
function_wrapper.cpp:200:3: note: previous statement is here
  200 |   if(esp>=0.0)
      |   ^
function_wrapper.cpp:192:8: warning: unused variable 'checkOK' [-Wunused-variable]
  192 |   bool checkOK = checkKDMparameters(local_score, sequence_length, score_probabilities, sequence_min_, sequence_max_, score_values_) ;
      |        ^~~~~~~
function_wrapper.cpp:226:8: warning: unused variable 'checkOK' [-Wunused-variable]
  226 |   bool checkOK = checkKDMparameters(1, 1, score_probabilities, sequence_min_, sequence_max_, score_values_) ;
      |        ^~~~~~~
function_wrapper.cpp:289:8: warning: unused variable 'checkOK' [-Wunused-variable]
  289 |   bool checkOK = checkKDMparameters(local_score, sequence_length, score_probabilities, sequence_min_, sequence_max_, score_values_) ;
      |        ^~~~~~~
function_wrapper.cpp:350:6: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation]
  350 |      double p = calcul_probMaxPartialSum(k, as<std::vector<double>>(score_probabilities), max_score, -min_score);
      |      ^
function_wrapper.cpp:347:3: note: previous statement is here
  347 |   if(k<0)
      |   ^
function_wrapper.cpp:337:8: warning: unused variable 'checkOK' [-Wunused-variable]
  337 |   bool checkOK = checkKDMparameters(1, 1, score_probabilities, sequence_min_, sequence_max_, score_values_) ;
      |        ^~~~~~~
7 warnings generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c localScoreC.cpp -o localScoreC.o
localScoreC.cpp:93:7: warning: unused variable 'fixNoScoreMatrixSize' [-Wunused-variable]
   93 |   int fixNoScoreMatrixSize = (numberOfLocalScores==0) ? 1 : 0; // needed to create finalScores Matrix in case of no localScore found
      |       ^~~~~~~~~~~~~~~~~~~~
1 warning generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c pValueMethods.cpp -o pValueMethods.o
pValueMethods.cpp:512:16: warning: unused variable 'i' [-Wunused-variable]
  512 |   unsigned int i ;
      |                ^
pValueMethods.cpp:629:10: warning: unused variable 'K_plus' [-Wunused-variable]
  629 |   double K_plus = karlin_parameters[1] ;
      |          ^~~~~~
pValueMethods.cpp:713:10: warning: unused variable 'R' [-Wunused-variable]
  713 |   double R = roots_separated.mod_smaller_one[0].real();
      |          ^
3 warnings generated.
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-19/lib -Wl,-O1 -o localScore.so RcppExports.o function_wrapper.o localScoreC.o pValueMethods.o -L/home/hornik/tmp/R-d-clang-19/lib -lR
installing to /srv/hornik/tmp/CRAN_pretest/localScore.Rcheck/00LOCK-localScore/00new/localScore/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (localScore)