* installing *source* package 'localScore' ...
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 12.3.0'
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c function_wrapper.cpp -o function_wrapper.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c localScoreC.cpp -o localScoreC.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c pValueMethods.cpp -o pValueMethods.o
pValueMethods.cpp: In function 'std::vector<double> calcul_deltaI_Complexe(RootTypes, std::vector<double>, int, int)':
pValueMethods.cpp:349:18: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  349 |     for (t = 0; t<cSize; t++){ // initialisation de la ligne avec des 0
      |                 ~^~~~~~
pValueMethods.cpp:361:15: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  361 |   for(s = 0; s<lSize; s++)
      |              ~^~~~~~
pValueMethods.cpp: In function 'double calcul_probMaxPartialSum(int, std::vector<double>, int, int)':
pValueMethods.cpp:409:45: warning: comparison of integer expressions of different signedness: 'std::vector<std::complex<double> >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
  409 |   if(roots_separated.mod_smaller_one.size() != u){
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
pValueMethods.cpp:413:50: warning: comparison of integer expressions of different signedness: 'std::vector<std::complex<double> >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
  413 |   if(roots_separated.mod_greaterequal_one.size() != v){
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
pValueMethods.cpp: In function 'double calcul_karlin(int, std::vector<double>, int, int, long int)':
pValueMethods.cpp:463:27: warning: comparison of integer expressions of different signedness: 'std::vector<double>::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
  463 |   if (distribution.size() != (u+v+1)) {
      |       ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
pValueMethods.cpp:493:45: warning: comparison of integer expressions of different signedness: 'std::vector<std::complex<double> >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
  493 |   if(roots_separated.mod_smaller_one.size() != u){
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
pValueMethods.cpp:497:50: warning: comparison of integer expressions of different signedness: 'std::vector<std::complex<double> >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
  497 |   if(roots_separated.mod_greaterequal_one.size() != v){
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
pValueMethods.cpp: In function 'double calcul_mcc(int, std::vector<double>, int, int, long int)':
pValueMethods.cpp:586:45: warning: comparison of integer expressions of different signedness: 'std::vector<std::complex<double> >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
  586 |   if(roots_separated.mod_smaller_one.size() != u){
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
pValueMethods.cpp:590:50: warning: comparison of integer expressions of different signedness: 'std::vector<std::complex<double> >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
  590 |   if(roots_separated.mod_greaterequal_one.size() != v){
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
pValueMethods.cpp:621:10: warning: unused variable 'lambda' [-Wunused-variable]
  621 |   double lambda = -log(R);
      |          ^~~~~~
pValueMethods.cpp: In function 'double mh_markov(int, Eigen::MatrixXd, Eigen::VectorXi, int, Eigen::VectorXd)':
pValueMethods.cpp:765:7: warning: unused variable 's_min' [-Wunused-variable]
  765 |   int s_min = scoreValues.minCoeff();
      |       ^~~~~
In file included from Eigen/Core:341,
                 from Eigen/Dense:1,
                 from pValueMethods.h:5,
                 from pValueMethods.cpp:10:
Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]':
Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized]
  327 |     internal::triangular_matrix_vector_product
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  328 |       <Index,Mode,
      |       ~~~~~~~~~~~~
  329 |        LhsScalar, LhsBlasTraits::NeedToConjugate,
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  330 |        RhsScalar, RhsBlasTraits::NeedToConjugate,
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  331 |        RowMajor>
      |        ~~~~~~~~~
  332 |       ::run(actualLhs.rows(),actualLhs.cols(),
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  333 |             actualLhs.data(),actualLhs.outerStride(),
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  334 |             actualRhsPtr,1,
      |             ~~~~~~~~~~~~~~~
  335 |             dest.data(),dest.innerStride(),
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  336 |             actualAlpha);
      |             ~~~~~~~~~~~~
Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here
  105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o localScore.dll tmp.def RcppExports.o function_wrapper.o localScoreC.o pValueMethods.o -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-localScore/00new/localScore/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (localScore)