test_that("create proper node lists, t > 1", { verify_output(test_path("test-Vars.txt"), { a <- c("A_1", "A_2", "A_3", "A_4") bs <- c("W") nodes <- list(c("L_1"), c("L_2"), c("L_3"), c("L_4")) # k = Inf foo <- LmtpVars$new(bs, nodes, a, NULL, NULL, "y", "binomial", 4) lapply(1:4, function(t) { list(trt = foo$history("A", t), outcome = foo$history("L", t + 1)) }) # k = 0 foo <- LmtpVars$new(bs, nodes, a, NULL, NULL, "y", "binomial", 4, k = 0) lapply(1:4, function(t) { list(trt = foo$history("A", t), outcome = foo$history("L", t + 1)) }) # k = 1 foo <- LmtpVars$new(bs, nodes, a, NULL, NULL, "y", "binomial", 4, k = 1) lapply(1:4, function(t) { list(trt = foo$history("A", t), outcome = foo$history("L", t + 1)) }) # k = 2 foo <- LmtpVars$new(bs, nodes, a, NULL, NULL, "y", "binomial", 4, k = 2) lapply(1:4, function(t) { list(trt = foo$history("A", t), outcome = foo$history("L", t + 1)) }) # NULL time-varying foo <- LmtpVars$new(bs, NULL, a, NULL, NULL, "y", "binomial", 4) lapply(1:4, function(t) { list(trt = foo$history("A", t), outcome = foo$history("L", t + 1)) }) # point-treatment survival foo <- LmtpVars$new(bs, NULL, "A", NULL, NULL, paste0("Y_", 1:4), "survival", 4) lapply(1:4, function(t) { list(trt = foo$history("A", t), outcome = foo$history("L", t + 1)) }) }) }) test_that("rename variable correctly", { a <- c("A_1", "A_2") bs <- c("W") nodes <- list(c("L_1_1", "L_1_2"), c("L_2_1", "L_2_2")) foo <- LmtpVars$new(bs, nodes, a, NULL, NULL, "y", "binomial", 2) expect_equal(as.vector(foo$rename("W")), "W") expect_equal(as.vector(foo$rename("A_1")), "..i..A_1") expect_equal(as.vector(foo$rename(c("L_1_1", "L_1_2"))), c("..i..L_1", "..i..L_2")) expect_equal(as.vector(foo$rename(c("L_2_1", "L_2_2"))), c("..i..L_1", "..i..L_2")) expect_equal(as.vector(foo$rename("y")), "..i..Y_1") }) test_that("pulls proper variables for a given time", { a <- c("A_1", "A_2") bs <- c("W") nodes <- list(c("L_1_1", "L_1_2"), c("L_2_1", "L_2_2")) foo <- LmtpVars$new(bs, nodes, a, NULL, NULL, "y", "binomial", 2) expect_equal(foo$time(1), c("W", "L_1_1", "L_1_2", "A_1", "y")) expect_equal(foo$time(2), c("W", "L_2_1", "L_2_2", "A_2", "y")) })