require(lme4) # sorry for fitting yet another sleepstudy model in the tests m <- lmer(Reaction ~ Days + (Days | Subject), sleepstudy) ST <- getME(m, "ST")$Subject # copied from vince dorie's simmer.R in arm: dimension <- nrow(ST) T <- ST diag(T) <- rep(1, dimension) S <- diag(diag(ST), dimension) vc0 <- getME(m, 'sigma')^2*tcrossprod(T %*% S) vc1 <- VarCorr(m)$Subject[,] dimnames(vc0) <- dimnames(vc1) all.equal(vc0, vc1, tolerance = 1e-6)