R Under development (unstable) (2024-06-18 r86781 ucrt) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > if (.Platform$OS.type != "windows") { + library(lme4) + library(testthat) + + .get.checkingOpts <- lme4:::.get.checkingOpts + stopifnot(identical( + .get.checkingOpts( + c("CheckMe", "check.foo", "check.conv.1", "check.rankZ", "check.rankX")) + , c("check.foo", "check.rankZ"))) + + lmod <- lFormula(Reaction ~ Days + (Days|Subject), sleepstudy) + devfun <- do.call(mkLmerDevfun, lmod) + opt <- optimizeLmer(devfun) + cc <- lme4:::checkConv(attr(opt,"derivs"), opt$par, ctrl = lmerControl()$checkConv, + lbound=environment(devfun)$lower) + fm1 <- mkMerMod(environment(devfun), opt, lmod$reTrms, fr = lmod$fr, + lme4conv=cc) + fm2 <- lmer(Reaction ~ Days + (Days|Subject), sleepstudy) + + ## basic equivalence + fm1C <- fm1 + fm1C@call <- fm2@call + expect_equal(fm2,fm1C) + expect_equal(range(residuals(fm1)), c(-101.18, 132.547), tolerance = 1e-5) # these are "outliers"! + expect_is(model.frame(fm1),"data.frame") + ## formulae + mfm1 <- model.frame(fm1) + expect_equal(formula(fm1), Reaction ~ Days + (Days | Subject)) + expect_equal(formula(terms(mfm1)), Reaction ~ Days + (Days + Subject)) + new_form_modframe <- (getRversion() >= "3.6.0" && + as.numeric(version[["svn rev"]]) >= 75891) + expect_equal(formula(mfm1), + if(new_form_modframe) { + Reaction ~ Days + (Days + Subject) + } else + Reaction ~ Days + Subject + ) + ## predictions + expect_equal(predict(fm1,newdata=sleepstudy[1:10,],re.form=NULL), + predict(fm2,newdata=sleepstudy[1:10,],re.form=NULL)) + expect_equal(predict(fm1,newdata=sleepstudy), + predict(fm1)) + + lmodOff <- lFormula(Reaction ~ Days + (Days|Subject) + offset(0.5*Days), + sleepstudy) + devfunOff <- do.call(mkLmerDevfun, lmodOff) + opt <- optimizeLmer(devfunOff) + fm1Off <- mkMerMod(environment(devfunOff), opt, lmodOff$reTrms, fr = lmodOff$fr) + fm2Off <- lmer(Reaction ~ Days + (Days|Subject) + offset(0.5*Days), sleepstudy) + expect_equal(predict(fm1Off,newdata=sleepstudy[1:10,],re.form=NULL), + predict(fm2Off,newdata=sleepstudy[1:10,],re.form=NULL)) + + ## FIXME: need more torture tests with offset specified, in different environments ... + + ## FIXME: drop1(.) doesn't work with modular objects ... hard to see how it + ## could, though ... + ## drop1(fm1Off) + drop1(fm2Off) + + } ## skip on windows (for speed) > > proc.time() user system elapsed 0.12 0.04 0.15