R Under development (unstable) (2024-06-18 r86781 ucrt) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > if (lme4:::testLevel() > 1 || .Platform$OS.type!="windows") { + ## example posted by Stéphane Laurent + ## exercises bug where Nelder-Mead min objective function value was >0 + set.seed(666) + sims <- function(I, J, sigmab0, sigmaw0){ + Mu <- rnorm(I, mean=0, sd=sigmab0) + y <- c(sapply(Mu, function(mu) rnorm(J, mu, sigmaw0))) + data.frame(y=y, group=gl(I,J)) + } + + I <- 3 # number of groups + J <- 8 # number of repeats per group + sigmab0 <- 0.15 # between standard deviation + sigmaw0 <- 0.15 # within standard deviation + + dat <- sims(I, J, sigmab0, sigmaw0) + + library(lme4) + isOldTol <- environment(nloptwrap)$defaultControl$xtol_abs == 1e-6 + + fm3 <- lmer(y ~ (1|group), data=dat) + stopifnot(all.equal(unname(unlist(VarCorr(fm3))), + switch(fm3@optinfo$optimizer, + "Nelder_Mead" = 0.029662844, + "bobyqa" = 0.029662698, + "nloptwrap" = + if (isOldTol) 0.029679755 else 0.029662699, + stop("need new case here: value is ",unname(unlist(VarCorr(fm3)))) + ), + tolerance = 1e-7)) + } ## skip on windows (for speed) > > proc.time() user system elapsed 1.03 0.07 1.09