R version 4.4.0 alpha (2024-03-26 r86209 ucrt) Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > if (lme4:::testLevel() > 1 || .Platform$OS.type != "windows") withAutoprint({ + library("lme4") + library("testthat") + + L <- load(system.file("testdata", "lme-tst-fits.rda", + package="lme4", mustWork=TRUE)) + ## -> "fit_*" objects + + fm1 <- fit_sleepstudy_2 + c0 <- confint(fm1, method="Wald") + c0B <- confint(fm1, method="Wald",parm="Days") + expect_equal(c0["Days",],c0B["Days",]) + expect_equal(c(c0B),c(7.437592,13.496980),tolerance=1e-6) + set.seed(101) + + for (bt in c("norm", "basic", "perc")) { + suppressWarnings( + confint(fm1, method="boot", boot.type=bt, nsim=10,quiet=TRUE)) + } + for (bt in c("stud","bca","junk")) { + expect_error(confint(fm1, method="boot", boot.type=bt, nsim=10), + "should be one of") + } + if((testLevel <- lme4:::testLevel()) > 1) { + pr1.56 <- profile(fm1, which = 5:6) + c1 <- confint(pr1.56, method="profile") + expect_equal(c0[5:6,],c1,tolerance=2e-3) ## expect Wald and profile _reasonably_ close + print(c1,digits=3) + ## + c6 <- confint(pr1.56, "Days") + expect_equal(c1[2, , drop=FALSE], c6) + c2 <- confint(fm1,method="boot",nsim=50,parm=5:6) + ## expect_error(confint(fm1,method="boot",nsim=50,parm="Days"), + ## "must be specified as an integer") + expect_equal(c1,c2,tolerance=2e-2) + print(c2,digits=3) + } + if (testLevel > 10) { + print(c1B <- confint(fm1, method="profile")) + print(c2B <- confint(fm1, method="boot")) + expect_equal(unname(c1B), unname(c2B), tolerance=2e-2) + } + }) ## skip if windows/testLevel<1 > > proc.time() user system elapsed 1.59 0.20 1.79