## data set and formula extracted from ?prLogisticDelta example ## (Thailand, clustered-data) in prLogistic package load(system.file("testdata","prLogistic.RData",package="lme4")) library(lme4) (testLevel <- lme4:::testLevel()) if (testLevel > 2) { print(system.time( lme4_est <- glmer(rgi ~ sex + pped + (1|schoolid), data = dataset, family=binomial) )) lme4_results <- list(sigma= sqrt(unname(unlist(VarCorr(lme4_est)))), beta = fixef(lme4_est)) ## stored results from other pkgs glmmML_est <- list(sigma = 1.25365353546143, beta = c("(Intercept)" = -2.19478801858317, "sex" = 0.548884468743364, "pped"= -0.623835613907385)) lme4.0_est <- list(sigma = 1.25369539060849, beta = c("(Intercept)" = -2.19474529099587, "sex" = 0.548900267825802, "pped"= -0.623934772981894)) source(system.file("test-tools-1.R", package = "Matrix"))#-> assert.EQ() etc assert.EQ.(lme4_results, glmmML_est, tol=3e-3) assert.EQ.(lme4_results, lme4.0_est, tol=3e-3) print(lme4_est) }