downloading reverse dependencies ... downloading markdown_2.0.tar.gz ... ok downloading ageutils_0.1.1.tar.gz ... ok downloading atime_2025.9.30.tar.gz ... ok downloading BradleyTerry2_1.1.3.tar.gz ... ok downloading bsplus_0.1.5.tar.gz ... ok downloading easybio_1.2.3.tar.gz ... ok downloading fastymd_0.1.4.tar.gz ... ok downloading flashr_0.3.0.tar.gz ... ok downloading grates_1.6.0.tar.gz ... ok downloading heplots_1.7.8.tar.gz ... ok downloading incidence2_2.6.3.tar.gz ... ok downloading knitr_1.50.tar.gz ... ok downloading mirai_2.5.1.tar.gz ... ok downloading nanonext_1.7.1.tar.gz ... ok downloading rapr_1.0.0.tar.gz ... ok downloading rgeomorphon_0.3.0.tar.gz ... ok downloading RWsearch_5.2.6.tar.gz ... ok downloading super_0.1.1.tar.gz ... ok downloading tinytable_0.15.0.tar.gz ... ok downloading xfun_0.54.tar.gz ... ok downloading ympes_1.9.0.tar.gz ... ok installing dependencies ‘archdata’, ‘binsegRcpp’, ‘candisc’, ‘ciTools’, ‘corrgram’, ‘ctv’, ‘fastymd’, ‘findR’, ‘foghorn’, ‘fpop’, ‘grates’, ‘JuliaCall’, ‘latexpdf’, ‘litedown’, ‘LOPART’, ‘mvinfluence’, ‘nc’, ‘pandoc’, ‘PeakSegDisk’, ‘prefmod’, ‘qqtest’, ‘Rdatasets’, ‘re2’, ‘revealjs’, ‘sig’, ‘Sleuth2’, ‘sos’, ‘vcdExtra’, ‘wbs’, ‘ymd’, ‘ympes’ begin installing package ‘re2’ begin installing package ‘binsegRcpp’ begin installing package ‘fastymd’ begin installing package ‘wbs’ begin installing package ‘fpop’ begin installing package ‘LOPART’ begin installing package ‘PeakSegDisk’ begin installing package ‘nc’ begin installing package ‘prefmod’ begin installing package ‘ymd’ begin installing package ‘revealjs’ begin installing package ‘candisc’ begin installing package ‘corrgram’ begin installing package ‘mvinfluence’ begin installing package ‘Sleuth2’ begin installing package ‘archdata’ begin installing package ‘qqtest’ begin installing package ‘vcdExtra’ begin installing package ‘ympes’ begin installing package ‘ciTools’ begin installing package ‘JuliaCall’ begin installing package ‘latexpdf’ begin installing package ‘sos’ begin installing package ‘sig’ begin installing package ‘ctv’ begin installing package ‘findR’ begin installing package ‘pandoc’ begin installing package ‘foghorn’ * installing *source* package ‘archdata’ ... ** this is package ‘archdata’ version ‘1.2-1’ ** package ‘archdata’ successfully unpacked and MD5 sums checked ** using staged installation ** data ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (archdata) begin installing package ‘Rdatasets’ * installing *source* package ‘sig’ ... ** this is package ‘sig’ version ‘0.0-6’ ** package ‘sig’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sig) begin installing package ‘litedown’ * installing *source* package ‘corrgram’ ... ** this is package ‘corrgram’ version ‘1.14’ ** package ‘corrgram’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (corrgram) * installing *source* package ‘fastymd’ ... ** this is package ‘fastymd’ version ‘0.1.4’ ** package ‘fastymd’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpgf12kP/R.INSTALL27128267cee4e4/fastymd/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c api.c -o api.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c civil_from_days.c -o civil_from_days.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c days_from_civil.c -o days_from_civil.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c epochdays.c -o epochdays.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fastymd.so api.o civil_from_days.o days_from_civil.o epochdays.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpgf12kP/R.INSTALL27128267cee4e4/fastymd/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fastymd/00new/fastymd/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastymd) * installing *source* package ‘findR’ ... ** this is package ‘findR’ version ‘0.2.1’ ** package ‘findR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (findR) begin installing package ‘grates’ * installing *source* package ‘ympes’ ... ** this is package ‘ympes’ version ‘1.9.0’ ** package ‘ympes’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ympes) * installing *source* package ‘ctv’ ... ** this is package ‘ctv’ version ‘0.9-7’ ** package ‘ctv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ctv) * installing *source* package ‘qqtest’ ... ** this is package ‘qqtest’ version ‘1.2.0’ ** package ‘qqtest’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qqtest) * installing *source* package ‘revealjs’ ... ** this is package ‘revealjs’ version ‘0.10.0’ ** package ‘revealjs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (revealjs) * installing *source* package ‘wbs’ ... ** this is package ‘wbs’ version ‘1.4.1’ ** package ‘wbs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvBgch7/R.INSTALL2712831e3e3a83/wbs/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wbs.c -o wbs.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wbs_init.c -o wbs_init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o wbs.so wbs.o wbs_init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvBgch7/R.INSTALL2712831e3e3a83/wbs/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-wbs/00new/wbs/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (wbs) * installing *source* package ‘latexpdf’ ... ** this is package ‘latexpdf’ version ‘0.1.8’ ** package ‘latexpdf’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (latexpdf) * installing *source* package ‘nc’ ... ** this is package ‘nc’ version ‘2025.3.24’ ** package ‘nc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nc) * installing *source* package ‘sos’ ... ** this is package ‘sos’ version ‘2.1-8’ ** package ‘sos’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sos) * installing *source* package ‘Rdatasets’ ... ** this is package ‘Rdatasets’ version ‘0.0.1’ ** package ‘Rdatasets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rdatasets) * installing *source* package ‘pandoc’ ... ** this is package ‘pandoc’ version ‘0.2.0’ ** package ‘pandoc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pandoc) * installing *source* package ‘Sleuth2’ ... ** this is package ‘Sleuth2’ version ‘2.0-7’ ** package ‘Sleuth2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Sleuth2) * installing *source* package ‘foghorn’ ... ** this is package ‘foghorn’ version ‘1.6.1’ ** package ‘foghorn’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (foghorn) * installing *source* package ‘mvinfluence’ ... ** this is package ‘mvinfluence’ version ‘0.9.2’ ** package ‘mvinfluence’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mvinfluence) * installing *source* package ‘PeakSegDisk’ ... ** this is package ‘PeakSegDisk’ version ‘2024.10.1’ ** package ‘PeakSegDisk’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3hsme4/R.INSTALL2712945494c97c/PeakSegDisk/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PeakSegFPOPLog.cpp -o PeakSegFPOPLog.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c funPieceListLog.cpp -o funPieceListLog.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c interface.cpp -o interface.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o PeakSegDisk.so PeakSegFPOPLog.o funPieceListLog.o interface.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3hsme4/R.INSTALL2712945494c97c/PeakSegDisk/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-PeakSegDisk/00new/PeakSegDisk/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PeakSegDisk) * installing *source* package ‘fpop’ ... ** this is package ‘fpop’ version ‘2019.08.26’ ** package ‘fpop’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvZoaPP/R.INSTALL27129b6e157998/fpop/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BinSeg_MultiDim.cpp -o BinSeg_MultiDim.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Call_BinSeg_MultiDim.cpp -o Call_BinSeg_MultiDim.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Heap.cpp -o Heap.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Node.cpp -o Node.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Rwrappers.cc -o Rwrappers.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c colibri.cc -o colibri.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c liste.cc -o liste.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fpop.so BinSeg_MultiDim.o Call_BinSeg_MultiDim.o Heap.o Node.o Rwrappers.o colibri.o liste.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvZoaPP/R.INSTALL27129b6e157998/fpop/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fpop/00new/fpop/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fpop) * installing *source* package ‘grates’ ... ** this is package ‘grates’ version ‘1.6.0’ ** package ‘grates’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (grates) * installing *source* package ‘candisc’ ... ** this is package ‘candisc’ version ‘0.9.0’ ** package ‘candisc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (candisc) * installing *source* package ‘litedown’ ... ** this is package ‘litedown’ version ‘0.8’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (litedown) * installing *source* package ‘JuliaCall’ ... ** this is package ‘JuliaCall’ version ‘0.17.6’ ** package ‘JuliaCall’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0hBaHK/R.INSTALL2712da1bab1e04/JuliaCall/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c JuliaCall.cpp -o JuliaCall.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c libjulia.cpp -o libjulia.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o JuliaCall.so JuliaCall.o RcppExports.o libjulia.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0hBaHK/R.INSTALL2712da1bab1e04/JuliaCall/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-JuliaCall/00new/JuliaCall/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (JuliaCall) * installing *source* package ‘prefmod’ ... ** this is package ‘prefmod’ version ‘0.8-37’ ** package ‘prefmod’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp6hS07c/R.INSTALL27129143ba3448/prefmod/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c prefmod.f95 -o prefmod.o prefmod.f95:11:2: 11 | use iso_c_binding | 1 Warning: Nonconforming tab character at (1) [-Wtabs] prefmod.f95:34:2: 34 | use iso_c_binding | 1 Warning: Nonconforming tab character at (1) [-Wtabs] prefmod.f95:86:2: 86 | use iso_c_binding | 1 Warning: Nonconforming tab character at (1) [-Wtabs] gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o prefmod.so init.o prefmod.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp6hS07c/R.INSTALL27129143ba3448/prefmod/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-prefmod/00new/prefmod/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prefmod) * installing *source* package ‘LOPART’ ... ** this is package ‘LOPART’ version ‘2024.6.19’ ** package ‘LOPART’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPiYXt7/R.INSTALL27129010e776a2/LOPART/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c LOPART.cpp -o LOPART.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c interface.cpp -o interface.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o LOPART.so LOPART.o RcppExports.o interface.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPiYXt7/R.INSTALL27129010e776a2/LOPART/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-LOPART/00new/LOPART/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LOPART) * installing *source* package ‘ciTools’ ... ** this is package ‘ciTools’ version ‘0.6.1’ ** package ‘ciTools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ciTools) * installing *source* package ‘vcdExtra’ ... ** this is package ‘vcdExtra’ version ‘0.8-6’ ** package ‘vcdExtra’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vcdExtra) * installing *source* package ‘binsegRcpp’ ... ** this is package ‘binsegRcpp’ version ‘2025.5.13’ ** package ‘binsegRcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJYSuWu/R.INSTALL2712873dad0ea3/binsegRcpp/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PiecewiseFunction.cpp -o PiecewiseFunction.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c binseg.cpp -o binseg.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cum_median.cpp -o cum_median.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c depth_first.cpp -o depth_first.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c interface.cpp -o interface.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o binsegRcpp.so PiecewiseFunction.o RcppExports.o binseg.o cum_median.o depth_first.o interface.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJYSuWu/R.INSTALL2712873dad0ea3/binsegRcpp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-binsegRcpp/00new/binsegRcpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (binsegRcpp) * installing *source* package ‘ymd’ ... ** this is package ‘ymd’ version ‘0.1.5’ ** package ‘ymd’ successfully unpacked and MD5 sums checked ** using staged installation Using cargo 1.89.0 (c24e10642 2025-06-23) (built from a source tarball) Using rustc 1.89.0 (29483883e 2025-08-04) (built from a source tarball) Building for CRAN. Writing `src/Makevars`. `tools/config.R` has finished. ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpK2gz4J/R.INSTALL2712a91d9d0b94/ymd/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c entrypoint.c -o entrypoint.o # Check if NOT_CRAN is false and unzip vendor.tar.xz if so if [ "" != "true" ]; then \ if [ -f ./rust/vendor.tar.xz ]; then \ tar xf rust/vendor.tar.xz && \ mkdir -p /home/hornik/tmp/scratch/RtmpK2gz4J/R.INSTALL2712a91d9d0b94/ymd/src/.cargo && \ cp rust/vendor-config.toml /home/hornik/tmp/scratch/RtmpK2gz4J/R.INSTALL2712a91d9d0b94/ymd/src/.cargo/config.toml; \ fi; \ fi export CARGO_HOME=/home/hornik/tmp/scratch/RtmpK2gz4J/R.INSTALL2712a91d9d0b94/ymd/src/.cargo && \ export PATH="/usr/local/bin:/usr/bin:/bin:/home/hornik/.cargo/bin" && \ RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target Compiling proc-macro2 v1.0.94 Compiling unicode-ident v1.0.18 Compiling build-print v0.1.1 Compiling extendr-ffi v0.8.0 Compiling autocfg v1.4.0 Compiling num-traits v0.2.19 Compiling quote v1.0.40 Compiling paste v1.0.15 Compiling syn v2.0.100 Compiling extendr-api v0.8.0 Compiling iana-time-zone v0.1.63 Compiling once_cell v1.21.3 Compiling chrono v0.4.40 Compiling extendr-macros v0.8.0 Compiling ymd v0.1.5 (/home/hornik/tmp/scratch/RtmpK2gz4J/R.INSTALL2712a91d9d0b94/ymd/src/rust) note: Link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms. note: native-static-libs: -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc Finished `release` profile [optimized] target(s) in 17.17s # Always clean up CARGOTMP rm -Rf /home/hornik/tmp/scratch/RtmpK2gz4J/R.INSTALL2712a91d9d0b94/ymd/src/.cargo; gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ymd.so entrypoint.o -L./rust/target/release -lymd -L/home/hornik/tmp/R/lib -lR rm -Rf /home/hornik/tmp/scratch/RtmpK2gz4J/R.INSTALL2712a91d9d0b94/ymd/src/.cargo /home/hornik/tmp/scratch/RtmpK2gz4J/R.INSTALL2712a91d9d0b94/ymd/src/vendor ./rust/target make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpK2gz4J/R.INSTALL2712a91d9d0b94/ymd/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ymd/00new/ymd/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ymd) * installing *source* package ‘re2’ ... ** this is package ‘re2’ version ‘0.1.4’ ** package ‘re2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplPpwr5/R.INSTALL27127836ad9e37/re2/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/util/rune.cc -o re2google/util/rune.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/util/strutil.cc -o re2google/util/strutil.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/bitstate.cc -o re2google/re2/bitstate.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/compile.cc -o re2google/re2/compile.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/dfa.cc -o re2google/re2/dfa.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/filtered_re2.cc -o re2google/re2/filtered_re2.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/mimics_pcre.cc -o re2google/re2/mimics_pcre.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/nfa.cc -o re2google/re2/nfa.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/onepass.cc -o re2google/re2/onepass.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/parse.cc -o re2google/re2/parse.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/perl_groups.cc -o re2google/re2/perl_groups.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/prefilter.cc -o re2google/re2/prefilter.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/prefilter_tree.cc -o re2google/re2/prefilter_tree.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/prog.cc -o re2google/re2/prog.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/re2.cc -o re2google/re2/re2.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/regexp.cc -o re2google/re2/regexp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/set.cc -o re2google/re2/set.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/simplify.cc -o re2google/re2/simplify.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/stringpiece.cc -o re2google/re2/stringpiece.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/tostring.cc -o re2google/re2/tostring.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/unicode_casefold.cc -o re2google/re2/unicode_casefold.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2google/re2/unicode_groups.cc -o re2google/re2/unicode_groups.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_re2proxy.cpp -o re2_re2proxy.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_regexp.cpp -o re2_regexp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_do_match.cpp -o re2_do_match.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_locate.cpp -o re2_locate.o re2_locate.cpp: In member function ‘virtual void {anonymous}::DoLocateAll::match_found(int, re2::StringPiece&, re2::RE2Proxy::Adapter&, const re2::AllMatches&)’: re2_locate.cpp:74:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 74 | for (int row = 0; row < all_matches.size(); row++) { | ~~~~^~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_get_options.cpp -o re2_get_options.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_match.cpp -o re2_match.o re2_match.cpp: In member function ‘virtual void {anonymous}::DoMatchAll::match_found(int, re2::StringPiece&, re2::RE2Proxy::Adapter&, const re2::AllMatches&)’: re2_match.cpp:143:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 143 | for (int row = 0; row < all_matches.size(); row++) { | ~~~~^~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_detect.cpp -o re2_detect.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_match_cpp.cpp -o re2_match_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_split.cpp -o re2_split.o re2_split.cpp: In member function ‘virtual void {anonymous}::DoSplit::match_found(int, re2::StringPiece&, re2::RE2Proxy::Adapter&, const re2::AllMatches&)’: re2_split.cpp:36:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 36 | for (; row < all_matches.size(); row++) { | ~~~~^~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_extract_replace.cpp -o re2_extract_replace.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_replace.cpp -o re2_replace.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_quote_meta.cpp -o re2_quote_meta.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_max_submatch.cpp -o re2_max_submatch.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_capturing_group.cpp -o re2_capturing_group.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -Ire2google -DNDEBUG -include re2/re2.h -DRE2_R_BUILD -pthread -DRE2_ON_VALGRIND -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c re2_random_text.cpp -o re2_random_text.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o re2.so re2google/util/rune.o re2google/util/strutil.o re2google/re2/bitstate.o re2google/re2/compile.o re2google/re2/dfa.o re2google/re2/filtered_re2.o re2google/re2/mimics_pcre.o re2google/re2/nfa.o re2google/re2/onepass.o re2google/re2/parse.o re2google/re2/perl_groups.o re2google/re2/prefilter.o re2google/re2/prefilter_tree.o re2google/re2/prog.o re2google/re2/re2.o re2google/re2/regexp.o re2google/re2/set.o re2google/re2/simplify.o re2google/re2/stringpiece.o re2google/re2/tostring.o re2google/re2/unicode_casefold.o re2google/re2/unicode_groups.o RcppExports.o re2_re2proxy.o re2_regexp.o re2_do_match.o re2_locate.o re2_get_options.o re2_match.o re2_detect.o re2_match_cpp.o re2_split.o re2_extract_replace.o re2_replace.o re2_quote_meta.o re2_max_submatch.o re2_capturing_group.o re2_random_text.o -pthread -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplPpwr5/R.INSTALL27127836ad9e37/re2/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-re2/00new/re2/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (re2) checking litedown_0.8.tar.gz ... checking markdown_2.0.tar.gz ... checking ageutils_0.1.1.tar.gz ... checking atime_2025.9.30.tar.gz ... checking BradleyTerry2_1.1.3.tar.gz ... checking bsplus_0.1.5.tar.gz ... checking easybio_1.2.3.tar.gz ... checking fastymd_0.1.4.tar.gz ... checking grates_1.6.0.tar.gz ... checking flashr_0.3.0.tar.gz ... checking incidence2_2.6.3.tar.gz ... checking heplots_1.7.8.tar.gz ... checking knitr_1.50.tar.gz ... checking mirai_2.5.1.tar.gz ... checking nanonext_1.7.1.tar.gz ... checking rapr_1.0.0.tar.gz ... checking rgeomorphon_0.3.0.tar.gz ... checking RWsearch_5.2.6.tar.gz ... checking super_0.1.1.tar.gz ... checking tinytable_0.15.0.tar.gz ... checking xfun_0.54.tar.gz ... checking ympes_1.9.0.tar.gz ... Depends: Package: litedown Depends: R (>= 3.2.0) Imports: utils, commonmark (>= 2.0.0), xfun (>= 0.54) Timings: user system elapsed litedown 38.192 3.926 44.208 Results: Check status summary: OK Source packages 1 Reverse depends 21 Check results summary: litedown ... OK rdepends_ageutils ... OK rdepends_atime ... OK rdepends_BradleyTerry2 ... OK rdepends_bsplus ... OK rdepends_easybio ... OK rdepends_fastymd ... OK rdepends_flashr ... OK rdepends_grates ... OK rdepends_heplots ... OK rdepends_incidence2 ... OK rdepends_knitr ... OK rdepends_markdown ... OK rdepends_mirai ... OK rdepends_nanonext ... OK rdepends_rapr ... OK rdepends_rgeomorphon ... OK rdepends_RWsearch ... OK rdepends_super ... OK rdepends_tinytable ... OK rdepends_xfun ... OK rdepends_ympes ... OK Check results changes: Package: knitr Check: DESCRIPTION meta-information Old result: NOTE New result: OK