context("Libname Tests") base_path <- "c:\\packages\\libr\\tests\\testthat\\data" base_path <- "./data" test_that("lib1: libname() function works as expected with csv.", { libname(dat, base_path, engine = "csv") expect_equal(class(dat)[[1]], "lib") expect_equal(length(dat), 2) expect_equal(nrow(dat[[1]]), 10) expect_equal(ncol(dat[[1]]), 9) expect_equal(nrow(dat[[2]]), 2) expect_equal(ncol(dat[[2]]), 9) }) test_that("lib2: libname() and quiet parameter works as expected with csv.", { libname(dat, base_path, engine = "csv", quiet = TRUE) expect_equal(class(dat)[[1]], "lib") expect_equal(length(dat), 2) expect_equal(nrow(dat[[1]]), 10) expect_equal(ncol(dat[[1]]), 9) expect_equal(nrow(dat[[2]]), 2) expect_equal(ncol(dat[[2]]), 9) }) libname(dat, "C:/packages/Testing/incyte/Vicky", engine = "csv") test_that("lib3: libname() function works as expected with rds", { libname(dat, base_path, engine = "rds") expect_equal(class(dat)[[1]], "lib") expect_equal(length(dat), 2) expect_equal(nrow(dat[[1]]), 10) expect_equal(ncol(dat[[1]]), 9) expect_equal(nrow(dat[[2]]), 2) expect_equal(ncol(dat[[2]]), 9) }) test_that("lib4: libname() function works as expected with rdata", { libname(dat, base_path, engine = "Rdata") expect_equal(class(dat)[[1]], "lib") expect_equal(length(dat), 2) expect_equal(nrow(dat[[1]]), 10) expect_equal(ncol(dat[[1]]), 9) expect_equal(nrow(dat[[2]]), 2) expect_equal(ncol(dat[[2]]), 9) }) test_that("lib5: libname() function works as expected with xls", { libname(dat, base_path, engine = "xls") expect_equal(class(dat)[[1]], "lib") expect_equal(length(dat), 2) expect_equal(nrow(dat[[1]]), 10) expect_equal(ncol(dat[[1]]), 9) expect_equal(nrow(dat[[2]]), 2) expect_equal(ncol(dat[[2]]), 9) }) test_that("lib6: libname() function works as expected with xlsx", { libname(dat, base_path, engine = "xlsx") expect_equal(class(dat)[[1]], "lib") expect_equal(length(dat), 2) expect_equal(nrow(dat[[1]]), 10) expect_equal(ncol(dat[[1]]), 9) expect_equal(nrow(dat[[2]]), 2) expect_equal(ncol(dat[[2]]), 9) }) test_that("lib7: libname() function works as expected with sas7bdat", { libname(dat, base_path, engine = "sas7bdat") expect_equal(class(dat)[[1]], "lib") expect_equal(length(dat), 2) expect_equal(nrow(dat[[1]]), 10) expect_equal(ncol(dat[[1]]), 9) expect_equal(nrow(dat[[2]]), 2) expect_equal(ncol(dat[[2]]), 9) }) test_that("lib8: libname() function works as expected with dbf", { tmp <- tempdir() libname(dat, tmp, "dbf") lib_add(dat, mtcars) libname(dat2, tmp, "dbf") expect_equal(length(dat2), 1) expect_equal(nrow(dat2[[1]]), 32) expect_equal(ncol(dat2[[1]]), 11) lib_delete(dat) lib_delete(dat2) }) test_that("lib9: libname() function works as expected with xpt", { tmp <- tempdir() libname(dat, tmp, "xpt") lib_add(dat, mtcars) libname(dat2, tmp, "xpt") expect_equal(length(dat2), 1) expect_equal(nrow(dat2[[1]]), 32) expect_equal(ncol(dat2[[1]]), 11) lib_delete(dat) lib_delete(dat2) }) test_that("lib10: libname() parameter checks work as expected.", { expect_error(libname(sam, engine = NULL)) expect_error(libname(sam, engine = c("sas7bdat", "rds"))) expect_error(libname(sam, engine = "rds", import_specs = "fork")) expect_error(libname(sam, engine = "fork")) }) test_that("lib11: libname() function works as expected with new directory", { fp <- file.path(tempdir(), "fork") libname(fork, fp) expect_equal(file.exists(fp), TRUE) if (file.exists(fp)) unlink(fp, recursive = TRUE) }) test_that("lib12: libname() function works as expected within a function.", { libname(dat, tempdir()) lib_load(dat) dat.cars <- mtcars dat.iris <- iris lib_unload(dat) expect_equal(length(dat), 2) }) test_that("lib13: libname() function works as expected within multiple functions.", { libname(dat, base_path, "csv") func1 <- function() { libname(dat, tempdir()) lib_add(dat, mtcars) ret <- names(dat) lib_delete(dat) return(ret) } func2 <- function() { alt <- file.path(tempdir(), "data2") libname(dat, alt) lib_add(dat, iris, beaver1) ret <- names(dat) lib_delete(dat) return(ret) } res1 <- func1() res2 <- func2() expect_equal(names(dat), c("demo_studya", "demo_studyb")) expect_equal(res1, c("mtcars")) expect_equal(res2, c("iris", "beaver1")) }) test_that("lib14: libname() function works as expected with nested functions.", { libname(dat, base_path, "csv") func1 <- function() { libname(dat, tempdir()) lib_add(dat, mtcars) ret <- names(dat) lib_delete(dat) return(ret) } func2 <- function() { alt <- file.path(tempdir(), "data2") libname(dat, alt) lib_add(dat, iris, beaver1) ret <- list() ret[["func2"]] <- names(dat) ret[["func1"]] <- func1() lib_delete(dat) return(ret) } res <- func2() expect_equal(names(dat), c("demo_studya", "demo_studyb")) expect_equal(res[["func1"]], c("mtcars")) expect_equal(res[["func2"]], c("iris", "beaver1")) }) test_that("lib15: libname() function works as expected with filter", { libname(dat, file.path( base_path, "SDTM"), engine = "sas7bdat", filter = c("ae", "dm", "lb", "vs")) d <- lib_info(dat)[["Name"]] expect_equal(as.character(d), c("ae", "dm", "lb", "vs")) libname(dat, file.path( base_path, "SDTM"), engine = "sas7bdat", filter = c("*e")) d <- lib_info(dat)[["Name"]] expect_equal(as.character(d), c("ae", "ie", "pe")) libname(dat, file.path( base_path, "SDTM"), engine = "sas7bdat", filter = c("d*", "ex", "qs")) d <- lib_info(dat)[["Name"]] expect_equal(all(d %in% c("da", "dm", "ds", "ds_ihor", "ex", "qs")), TRUE) }) test_that("lib16: libname() works as expected with basic operations.", { libname(spork, file.path( base_path, "SDTM"), engine = "sas7bdat", filter = c("ae", "dm", "lb", "vs")) expect_equal("spork" %in% ls(), TRUE) lib_load(spork) expect_equal("spork.ae" %in% ls(), TRUE) lib_unload(spork) expect_equal("spork.ae" %in% ls(), FALSE) rm("spork") }) test_that("lib17: libname() standard_eval parameter works as expected with basic operations.", { myvar <- "fork" libname(myvar, file.path( base_path, "SDTM"), engine = "sas7bdat", filter = c("ae", "dm", "lb", "vs"), standard_eval = TRUE) expect_equal("fork" %in% ls(), TRUE) lib_load(myvar) expect_equal("fork.ae" %in% ls(), TRUE) lib_unload(myvar) expect_equal("fork.ae" %in% ls(), FALSE) rm("myvar", "fork") }) test_that("lib18: libname() standard_eval parameter works as expected with all operations.", { myvar1 <- "bork1" myvar2 <- "bork2" libname(myvar1, file.path( base_path, "SDTM"), engine = "csv", filter = c("ae", "dm", "lb", "vs"), standard_eval = TRUE) expect_equal(myvar1 %in% ls(), TRUE) lib_info(myvar1) lib_path(myvar1) lib_size(myvar1) lib_load(myvar1) expect_equal("bork1.AE" %in% ls(), TRUE) lib_unload(myvar1) expect_equal("bork1.AE" %in% ls(), FALSE) lib_copy(myvar1, myvar2, paste0(base_path, "2"), standard_eval = TRUE) expect_equal(nrow(lib_info(myvar2)), 4) lib_path(myvar2) lib_size(myvar2) lib_load(myvar2) expect_equal("bork2.AE" %in% ls(), TRUE) bork2.mtcars <- mtcars expect_equal(nrow(lib_info(myvar2)), 4) lib_sync(myvar2) expect_equal(nrow(lib_info(myvar2)), 5) lib_write(myvar2) lib_info(myvar2) lib_remove(myvar2, "mtcars") expect_equal(nrow(lib_info(myvar2)), 4) lib_unload(myvar2) expect_equal("bork2.AE" %in% ls(), FALSE) lib_add(myvar2, mtcars) expect_equal("mtcars" %in% lib_info(myvar2)[[1]], TRUE) lib_replace(myvar2, mtcars[1:10, 1:5], name = "mtcars") expect_equal(nrow(lib_info(myvar2)), 5) lib_delete(myvar2) expect_equal(myvar2 %in% ls(), FALSE) rm("bork1", "myvar1", "myvar2") }) test_that("lib19: library parameter checks work as expected.", { fork <- "bork" f <- "fork" expect_error(lib_load(f)) expect_error(lib_unload(f)) expect_error(lib_add(f)) expect_error(lib_replace(f)) expect_error(lib_remove(f)) expect_error(lib_write(f)) expect_error(lib_sync(f)) expect_error(lib_copy(f)) expect_error(lib_delete(f)) expect_error(lib_path(f)) expect_error(lib_size(f)) expect_error(lib_info(f)) }) test_that("lib20: lib_export() function works as expected.", { libname(dat, base_path, engine = "csv") pth <- paste0(base_path, "2") lib_export(dat, dat2, pth, "rdata") expect_equal(length(dat2), 2) # Clean up lib_delete(dat2) }) test_that("lib21: lib_export() function works as expected with filter.", { libname(dat, base_path, engine = "csv") pth <- paste0(base_path, "2") lib_export(dat, dat2, pth, "rdata", filter = "*b") expect_equal(length(dat2), 1) # Clean up lib_delete(dat2) }) test_that("lib22: lib_export() function works as expected with standard_eval.", { libname(dat, base_path, engine = "csv") pth <- paste0(base_path, "2") lib_export(dat, "dat3", pth, "rdata", standard_eval = TRUE) expect_equal(length(dat3), 2) # Clean up lib_delete(dat3) }) test_that("lib23: libname works with rda files", { libname(dat, base_path, engine = "rda") lib_load(dat) expect_equal(length(dat), 2) res1 <- lib_info(dat) expect_equal(res1[[1, "Extension"]], "rda") pth2 <- paste0(base_path, "2") libname(dat2, pth2, engine = "rda") lib_add(dat2, mtcars) res2 <- lib_info(dat2) expect_equal(res2[[1, "Extension"]], "rda") lib_copy(dat, dat3, lib_path(dat2)) res3 <- lib_info(dat3) expect_equal(nrow(res3), 2) lib_remove(dat3, name = "demo_studya") res4 <- lib_info(dat3) expect_equal(nrow(res4), 1) lib_delete(dat2) lib_delete(dat3) }) test_that("lib24: lib_export() creates new library.", { libname(dat, base_path, "xpt", filter = "AD*") pth2 <- paste0(base_path, "2") lib_export(dat, dat2, pth2, "rda") res <- lib_info(dat2) expect_equal(nrow(res), 2) expect_equal(res[[1, 2]], "rda") lib_delete(dat2) }) test_that("lib25: libname() function works as expected with rds", { libname(dat, base_path, engine = "rds", where = expression(sex == 'F')) # dat$demo_studya # dat$demo_studyb expect_equal(class(dat)[[1]], "lib") expect_equal(length(dat), 2) expect_equal(nrow(dat[[1]]), 3) expect_equal(ncol(dat[[1]]), 9) expect_equal(nrow(dat[[2]]), 1) expect_equal(ncol(dat[[2]]), 9) }) test_that("lib26: sas7bdat dates are retained", { libname(dat, base_path, engine = "sas7bdat") cls <- class(dat$demo_studyb$dob) expect_equal("Date" %in% cls, TRUE) }) test_that("lib26: labels on data are retained after where clause", { libname(dat, base_path, engine = "sas7bdat") lbl1 <- labels(dat$demo_studya) expect_equal(length(lbl1) > 0, TRUE) libname(dat2, base_path, engine = "sas7bdat", where = expression(sex == 'F')) lbl2 <- labels(dat2$demo_studya) expect_equal(length(lbl2) > 0, TRUE) }) # # test_that("lib24: lib_export() creates new library.", { # # v1 <- c(P1 = 10, P2 = 20, P3 = 30) # # saveRDS(v1, "C:/packages/libr/tests/testthat/data/vect.rds") # # libname(testme, base_path, "rds") # # # })