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Type 'q()' to quit R. > library(testthat) > library(lgspline) Attaching package: 'lgspline' The following object is masked from 'package:stats': integrate > test_check("lgspline") Pre-Processing Starting Polynomial Expansions Standardization Get Knots Expansion Standardize Knot Expand 2nd Derivative Penalty Constraint Matrix Predictor-and-Partition Penalty Setup Parallel and Weighting Setup SQP Setup Tune Smoothing Spline Penalty Starting tuning Xy Getting pseudocount delta GCV, gradient, and BFGS Function prep blockfit dispatch active during tuning ( 1 flat cols ) Final update Prep for final fitting Last fit Blockfit backfit Backfitting DNR iter 1 | deviance: 0.443673 Backfitting DNR iter 2 | deviance: 0.304613 Backfitting DNR iter 3 | deviance: 0.343699 Backfitting DNR iter 4 | deviance: 0.330544 Backfitting DNR iter 5 | deviance: 0.340931 Backfitting DNR iter 6 | deviance: 0.331091 Backfitting DNR iter 7 | deviance: 0.34049 Backfitting DNR iter 8 | deviance: 0.331492 Backfitting DNR iter 9 | deviance: 0.33989 Backfitting DNR iter 10 | deviance: 0.332112 Backfitting DNR iter 11 | deviance: 0.339264 Backfitting DNR iter 12 | deviance: 0.332812 blockfit_solve returning: K = 1 | p = 6 | flat_cols = 6 | n_result = 2 | has_G = TRUE | has_Ghalf = TRUE | has_GhalfInv = TRUE | has_qp_info = FALSE After Fitting Processing Optional Components U Variance Est VarCov Mat Lagrangian Multiplier Smoothing Spline Model ============================================ Model Family (Link Function): weibull (log) Number of Observations: 1000 Number of Predictors: 2 Number of Partitions: 2 Basis Functions per Partition: 6 Lagrangian Multiplier Smoothing Spline Model Summary ==================================================== Model Family: quasibinomial Model Family (Link Function): quasibinomial (logit) Observations: 250 Predictors: 1 Partitions: 11 Basis Functions per Partition: 4 ---------------------------------------------------- Univariate Inference: Estimate Std.Error z value Lower 95% Upper 95% partition1.intercept -3.6772e-01 4.5464e+02 -0.0008 -891.4432 890.7077 partition1.x -6.8561e-14 4.8906e+02 0.0000 -958.5351 958.5351 partition1.x^2 -3.4949e-14 1.7739e+02 0.0000 -347.6707 347.6707 partition1.x^3 -2.6972e-15 2.1701e+01 0.0000 -42.5327 42.5327 partition2.intercept -2.1240e+01 2.9944e+02 -0.0709 -608.1332 565.6527 partition2.x -2.7819e+01 3.9922e+02 -0.0697 -810.2695 754.6309 partition2.x^2 -1.2399e+01 1.7934e+02 -0.0691 -363.8927 339.0937 partition2.x^3 -1.8313e+00 2.7155e+01 -0.0674 -55.0542 51.3916 partition3.intercept -4.5353e+00 1.6690e+02 -0.0272 -331.6575 322.5869 partition3.x -6.4097e+00 2.9553e+02 -0.0217 -585.6346 572.8153 partition3.x^2 -3.9017e+00 1.7587e+02 -0.0222 -348.5988 340.7953 partition3.x^3 -7.8797e-01 3.5188e+01 -0.0224 -69.7552 68.1792 partition4.intercept -2.6236e-01 6.6641e+01 -0.0039 -130.8764 130.3517 partition4.x 3.1164e-15 1.7838e+02 0.0000 -349.6203 349.6203 partition4.x^2 -2.0558e-15 1.5933e+02 0.0000 -312.2788 312.2788 partition4.x^3 -5.9937e-16 4.7508e+01 0.0000 -93.1146 93.1146 partition5.intercept 4.0620e+00 1.1568e+01 0.3511 -18.6110 26.7350 partition5.x 2.5802e+01 6.3614e+01 0.4056 -98.8793 150.4839 partition5.x^2 4.6646e+01 1.1394e+02 0.4094 -176.6717 269.9630 partition5.x^3 2.6855e+01 6.6813e+01 0.4019 -104.0958 157.8059 partition6.intercept -8.7011e-02 6.2518e-01 -0.1392 -1.3123 1.1383 partition6.x -4.7553e-20 4.5139e+00 0.0000 -8.8470 8.8470 partition6.x^2 1.4524e-17 1.8445e+01 0.0000 -36.1519 36.1519 partition6.x^3 2.3413e-18 8.0497e+01 0.0000 -157.7709 157.7709 partition7.intercept -1.9148e+00 1.0462e+01 -0.1830 -22.4192 18.5895 partition7.x 6.6690e+00 6.0114e+01 0.1109 -111.1521 124.4901 partition7.x^2 -1.4569e+01 1.1332e+02 -0.1286 -236.6758 207.5381 partition7.x^3 1.6007e+01 7.0587e+01 0.2268 -122.3413 154.3549 partition8.intercept 3.9514e+01 6.5332e+01 0.6048 -88.5338 167.5616 partition8.x -7.6210e+01 1.7690e+02 -0.4308 -422.9200 270.5002 partition8.x^2 3.9633e+01 1.6053e+02 0.2469 -274.9943 354.2602 partition8.x^3 -3.1028e+00 4.8847e+01 -0.0635 -98.8408 92.6353 partition9.intercept 1.2809e+00 1.6294e+02 0.0079 -318.0756 320.6375 partition9.x 1.7452e-13 2.9200e+02 0.0000 -572.3088 572.3088 partition9.x^2 -9.8680e-14 1.7614e+02 0.0000 -345.2231 345.2231 partition9.x^3 2.8770e-14 3.5781e+01 0.0000 -70.1301 70.1301 partition10.intercept -7.2643e+01 2.9442e+02 -0.2467 -649.6939 504.4075 partition10.x 1.2731e+02 3.9582e+02 0.3216 -648.4770 903.0995 partition10.x^2 -7.0459e+01 1.7970e+02 -0.3921 -422.6616 281.7443 partition10.x^3 1.2591e+01 2.7565e+01 0.4568 -41.4356 66.6176 partition11.intercept -4.4183e-01 4.4725e+02 -0.0010 -877.0310 876.1473 partition11.x 4.3630e-14 4.8498e+02 0.0000 -950.5474 950.5474 partition11.x^2 -1.4391e-14 1.7687e+02 0.0000 -346.6670 346.6670 partition11.x^3 2.3975e-15 2.1699e+01 0.0000 -42.5294 42.5294 Pr(>|z|) partition1.intercept 0.9994 partition1.x 1.0000 partition1.x^2 1.0000 partition1.x^3 1.0000 partition2.intercept 0.9435 partition2.x 0.9444 partition2.x^2 0.9449 partition2.x^3 0.9462 partition3.intercept 0.9783 partition3.x 0.9827 partition3.x^2 0.9823 partition3.x^3 0.9821 partition4.intercept 0.9969 partition4.x 1.0000 partition4.x^2 1.0000 partition4.x^3 1.0000 partition5.intercept 0.7255 partition5.x 0.6850 partition5.x^2 0.6823 partition5.x^3 0.6877 partition6.intercept 0.8893 partition6.x 1.0000 partition6.x^2 1.0000 partition6.x^3 1.0000 partition7.intercept 0.8548 partition7.x 0.9117 partition7.x^2 0.8977 partition7.x^3 0.8206 partition8.intercept 0.5453 partition8.x 0.6666 partition8.x^2 0.8050 partition8.x^3 0.9494 partition9.intercept 0.9937 partition9.x 1.0000 partition9.x^2 1.0000 partition9.x^3 1.0000 partition10.intercept 0.8051 partition10.x 0.7477 partition10.x^2 0.6950 partition10.x^3 0.6478 partition11.intercept 0.9992 partition11.x 1.0000 partition11.x^2 1.0000 partition11.x^3 1.0000 Dispersion: 0.9973148 Effective degrees of freedom: 215.7815 Critical value for confidence intervals: 1.959964 ---------------------------------------------------- [ FAIL 0 | WARN 0 | SKIP 1 | PASS 113 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • On CRAN (1): 'test-parallel.R:2:3' [ FAIL 0 | WARN 0 | SKIP 1 | PASS 113 ] > > proc.time() user system elapsed 6.04 0.95 7.00