R Under development (unstable) (2025-08-21 r88668 ucrt) -- "Unsuffered Consequences"
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Platform: x86_64-w64-mingw32/x64

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> library(lgcp)

 Welcome to 'lgcp': Log-Gaussian Cox Process
 B. M. Taylor & T. M. Davies & B. S. Rowlingson & P. J. Diggle.

Type '?lgcp' for details.

Type 'lgcpvignette()' to view the basic package vignette.

Type 'lgcpbayes()' to view the Bayesian package vignette.

Type 'citation("lgcp")' to view the citation for this package.

Please see the lgcp package NEWS file for latest additions, changes and bug fixes.

Note, RandomFields covariance functions are currently unavailable.
> 
> testIterators <- list(
+                       m1 = mcmcLoop(N=15,burnin=3,thin=4),
+                       m2 = mcmcLoop(N=15,burnin=0,thin=4,trim=FALSE),
+                       m3 = mcmcLoop(N=15,burnin=1,thin=1,trim=FALSE)
+                       )
Warning message:
In mcmcLoop(N = 15, burnin = 0, thin = 4, trim = FALSE) :
  3 iterations will be wasted after last retained iteration.
> 
> for(tim in testIterators){
+   print(tim)
+   summary(tim)
+   resetLoop(tim)
+   summary(tim)
+ }
mcmc loop controller

   iterations: 15 
      burn-in: 3 
     thinning: 1/4
      current: 0 
Initialising
Iteration  0 - burn-in 
Iteration  1  burnin:  TRUE  retain:  FALSE 
Iteration  1 - burn-in 
Iteration  2  burnin:  TRUE  retain:  FALSE 
Iteration  2 - burn-in 
Iteration  3  burnin:  TRUE  retain:  FALSE 
Iteration  3 - burn-in 
Iteration  4  burnin:  FALSE  retain:  FALSE 
Iteration  4
Iteration  5  burnin:  FALSE  retain:  FALSE 
Iteration  5
Iteration  6  burnin:  FALSE  retain:  FALSE 
Iteration  6
Iteration  7  burnin:  FALSE  retain:  TRUE 
Iteration  7 - retained
Iteration  8  burnin:  FALSE  retain:  FALSE 
Iteration  8
Iteration  9  burnin:  FALSE  retain:  FALSE 
Iteration  9
Iteration  10  burnin:  FALSE  retain:  FALSE 
Iteration  10
Iteration  11  burnin:  FALSE  retain:  TRUE 
Iteration  11 - retained
Iteration  12  burnin:  FALSE  retain:  FALSE 
Iteration  12
Iteration  13  burnin:  FALSE  retain:  FALSE 
Iteration  13
Iteration  14  burnin:  FALSE  retain:  FALSE 
Iteration  14
Iteration  15  burnin:  FALSE  retain:  TRUE 
Iteration  15 - retained
Finished
Initialising
Iteration  0 - burn-in 
Iteration  1  burnin:  TRUE  retain:  FALSE 
Iteration  1 - burn-in 
Iteration  2  burnin:  TRUE  retain:  FALSE 
Iteration  2 - burn-in 
Iteration  3  burnin:  TRUE  retain:  FALSE 
Iteration  3 - burn-in 
Iteration  4  burnin:  FALSE  retain:  FALSE 
Iteration  4
Iteration  5  burnin:  FALSE  retain:  FALSE 
Iteration  5
Iteration  6  burnin:  FALSE  retain:  FALSE 
Iteration  6
Iteration  7  burnin:  FALSE  retain:  TRUE 
Iteration  7 - retained
Iteration  8  burnin:  FALSE  retain:  FALSE 
Iteration  8
Iteration  9  burnin:  FALSE  retain:  FALSE 
Iteration  9
Iteration  10  burnin:  FALSE  retain:  FALSE 
Iteration  10
Iteration  11  burnin:  FALSE  retain:  TRUE 
Iteration  11 - retained
Iteration  12  burnin:  FALSE  retain:  FALSE 
Iteration  12
Iteration  13  burnin:  FALSE  retain:  FALSE 
Iteration  13
Iteration  14  burnin:  FALSE  retain:  FALSE 
Iteration  14
Iteration  15  burnin:  FALSE  retain:  TRUE 
Iteration  15 - retained
Finished
mcmc loop controller

   iterations: 15 
      burn-in: 0 
     thinning: 1/4
      current: 0 
Initialising
Iteration  0 - burn-in 
Iteration  1  burnin:  FALSE  retain:  FALSE 
Iteration  1
Iteration  2  burnin:  FALSE  retain:  FALSE 
Iteration  2
Iteration  3  burnin:  FALSE  retain:  FALSE 
Iteration  3
Iteration  4  burnin:  FALSE  retain:  TRUE 
Iteration  4 - retained
Iteration  5  burnin:  FALSE  retain:  FALSE 
Iteration  5
Iteration  6  burnin:  FALSE  retain:  FALSE 
Iteration  6
Iteration  7  burnin:  FALSE  retain:  FALSE 
Iteration  7
Iteration  8  burnin:  FALSE  retain:  TRUE 
Iteration  8 - retained
Iteration  9  burnin:  FALSE  retain:  FALSE 
Iteration  9
Iteration  10  burnin:  FALSE  retain:  FALSE 
Iteration  10
Iteration  11  burnin:  FALSE  retain:  FALSE 
Iteration  11
Iteration  12  burnin:  FALSE  retain:  TRUE 
Iteration  12 - retained
Iteration  13  burnin:  FALSE  retain:  FALSE 
Iteration  13
Iteration  14  burnin:  FALSE  retain:  FALSE 
Iteration  14
Iteration  15  burnin:  FALSE  retain:  FALSE 
Iteration  15
Finished
Initialising
Iteration  0 - burn-in 
Iteration  1  burnin:  FALSE  retain:  FALSE 
Iteration  1
Iteration  2  burnin:  FALSE  retain:  FALSE 
Iteration  2
Iteration  3  burnin:  FALSE  retain:  FALSE 
Iteration  3
Iteration  4  burnin:  FALSE  retain:  TRUE 
Iteration  4 - retained
Iteration  5  burnin:  FALSE  retain:  FALSE 
Iteration  5
Iteration  6  burnin:  FALSE  retain:  FALSE 
Iteration  6
Iteration  7  burnin:  FALSE  retain:  FALSE 
Iteration  7
Iteration  8  burnin:  FALSE  retain:  TRUE 
Iteration  8 - retained
Iteration  9  burnin:  FALSE  retain:  FALSE 
Iteration  9
Iteration  10  burnin:  FALSE  retain:  FALSE 
Iteration  10
Iteration  11  burnin:  FALSE  retain:  FALSE 
Iteration  11
Iteration  12  burnin:  FALSE  retain:  TRUE 
Iteration  12 - retained
Iteration  13  burnin:  FALSE  retain:  FALSE 
Iteration  13
Iteration  14  burnin:  FALSE  retain:  FALSE 
Iteration  14
Iteration  15  burnin:  FALSE  retain:  FALSE 
Iteration  15
Finished
mcmc loop controller

   iterations: 15 
      burn-in: 1 
     thinning: 1/1
      current: 0 
Initialising
Iteration  0 - burn-in 
Iteration  1  burnin:  TRUE  retain:  FALSE 
Iteration  1 - burn-in 
Iteration  2  burnin:  FALSE  retain:  TRUE 
Iteration  2 - retained
Iteration  3  burnin:  FALSE  retain:  TRUE 
Iteration  3 - retained
Iteration  4  burnin:  FALSE  retain:  TRUE 
Iteration  4 - retained
Iteration  5  burnin:  FALSE  retain:  TRUE 
Iteration  5 - retained
Iteration  6  burnin:  FALSE  retain:  TRUE 
Iteration  6 - retained
Iteration  7  burnin:  FALSE  retain:  TRUE 
Iteration  7 - retained
Iteration  8  burnin:  FALSE  retain:  TRUE 
Iteration  8 - retained
Iteration  9  burnin:  FALSE  retain:  TRUE 
Iteration  9 - retained
Iteration  10  burnin:  FALSE  retain:  TRUE 
Iteration  10 - retained
Iteration  11  burnin:  FALSE  retain:  TRUE 
Iteration  11 - retained
Iteration  12  burnin:  FALSE  retain:  TRUE 
Iteration  12 - retained
Iteration  13  burnin:  FALSE  retain:  TRUE 
Iteration  13 - retained
Iteration  14  burnin:  FALSE  retain:  TRUE 
Iteration  14 - retained
Iteration  15  burnin:  FALSE  retain:  TRUE 
Iteration  15 - retained
Finished
Initialising
Iteration  0 - burn-in 
Iteration  1  burnin:  TRUE  retain:  FALSE 
Iteration  1 - burn-in 
Iteration  2  burnin:  FALSE  retain:  TRUE 
Iteration  2 - retained
Iteration  3  burnin:  FALSE  retain:  TRUE 
Iteration  3 - retained
Iteration  4  burnin:  FALSE  retain:  TRUE 
Iteration  4 - retained
Iteration  5  burnin:  FALSE  retain:  TRUE 
Iteration  5 - retained
Iteration  6  burnin:  FALSE  retain:  TRUE 
Iteration  6 - retained
Iteration  7  burnin:  FALSE  retain:  TRUE 
Iteration  7 - retained
Iteration  8  burnin:  FALSE  retain:  TRUE 
Iteration  8 - retained
Iteration  9  burnin:  FALSE  retain:  TRUE 
Iteration  9 - retained
Iteration  10  burnin:  FALSE  retain:  TRUE 
Iteration  10 - retained
Iteration  11  burnin:  FALSE  retain:  TRUE 
Iteration  11 - retained
Iteration  12  burnin:  FALSE  retain:  TRUE 
Iteration  12 - retained
Iteration  13  burnin:  FALSE  retain:  TRUE 
Iteration  13 - retained
Iteration  14  burnin:  FALSE  retain:  TRUE 
Iteration  14 - retained
Iteration  15  burnin:  FALSE  retain:  TRUE 
Iteration  15 - retained
Finished
> 
> proc.time()
   user  system elapsed 
   9.03    0.62    9.70