* using log directory ‘/srv/hornik/tmp/CRAN/lfe.Rcheck’ * using R Under development (unstable) (2024-01-12 r85803) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.6 (3) Debian flang-new version 17.0.6 (3) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘lfe/DESCRIPTION’ ... OK * this is package ‘lfe’ version ‘3.0-0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [5s/7s] NOTE Maintainer: ‘Mauricio Vargas Sepulveda ’ New maintainer: Mauricio Vargas Sepulveda Old maintainer(s): Matthieu Stigler * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘lfe’ can be installed ... [10s/10s] OK * used C compiler: ‘Debian clang version 17.0.6 (3)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking whether startup messages can be suppressed ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [13s/13s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented code objects: ‘..oldfelm’ All user-level objects in a package should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [10s/8s] NOTE Examples with CPU time > 2.5 times elapsed time user system elapsed ratio mctrace 2.128 0 0.787 2.704 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [26s/25s] OK Running ‘anomalies.R’ [2s/2s] Comparing ‘anomalies.Rout’ to ‘anomalies.Rout.save’ ... OK Running ‘bctest.R’ [2s/2s] Comparing ‘bctest.Rout’ to ‘bctest.Rout.save’ ... OK Running ‘cgsolve.R’ [1s/1s] Comparing ‘cgsolve.Rout’ to ‘cgsolve.Rout.save’ ... OK Running ‘cluster.R’ [1s/1s] Comparing ‘cluster.Rout’ to ‘cluster.Rout.save’ ... OK Running ‘comparelm.R’ [1s/1s] Comparing ‘comparelm.Rout’ to ‘comparelm.Rout.save’ ... OK Running ‘degenerate.R’ [1s/1s] Comparing ‘degenerate.Rout’ to ‘degenerate.Rout.save’ ...27c27 < the matrix is either rank-deficient or not positive definite --- > the matrix is either rank-deficient or indefinite 32c32 < the matrix is either rank-deficient or not positive definite --- > the matrix is either rank-deficient or indefinite Running ‘efcheck.R’ [2s/2s] Comparing ‘efcheck.Rout’ to ‘efcheck.Rout.save’ ...23c23 < the matrix is either rank-deficient or not positive definite --- > the matrix is either rank-deficient or indefinite Running ‘fourfac.R’ [1s/1s] Comparing ‘fourfac.Rout’ to ‘fourfac.Rout.save’ ... OK Running ‘intact.R’ [1s/1s] Comparing ‘intact.Rout’ to ‘intact.Rout.save’ ... OK Running ‘interact.R’ [1s/1s] Comparing ‘interact.Rout’ to ‘interact.Rout.save’ ... OK Running ‘ivtest.R’ [1s/1s] Comparing ‘ivtest.Rout’ to ‘ivtest.Rout.save’ ... OK Running ‘lfetest.R’ [1s/1s] Comparing ‘lfetest.Rout’ to ‘lfetest.Rout.save’ ... OK Running ‘mlhs.R’ [1s/1s] Comparing ‘mlhs.Rout’ to ‘mlhs.Rout.save’ ... OK Running ‘multiway.R’ [1s/1s] Comparing ‘multiway.Rout’ to ‘multiway.Rout.save’ ...41c41 < the matrix is either rank-deficient or not positive definite --- > the matrix is either rank-deficient or indefinite Running ‘naomit.R’ [1s/1s] Comparing ‘naomit.Rout’ to ‘naomit.Rout.save’ ... OK Running ‘nonest.R’ [1s/1s] Comparing ‘nonest.Rout’ to ‘nonest.Rout.save’ ... OK Running ‘onefac.R’ [1s/1s] Comparing ‘onefac.Rout’ to ‘onefac.Rout.save’ ... OK Running ‘testthat.R’ [1s/1s] Running ‘verify.R’ [2s/2s] Comparing ‘verify.Rout’ to ‘verify.Rout.save’ ... OK Running ‘weights.R’ [2s/2s] Comparing ‘weights.Rout’ to ‘weights.Rout.save’ ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [32s/32s] OK * checking PDF version of manual ... [4s/4s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 WARNING, 2 NOTEs