* installing *source* package ‘lefko3’ ...
** this is package ‘lefko3’ version ‘6.7.2’
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O2 -Wall -pedantic -mtune=native   -c DataManagement.cpp -o DataManagement.o
In file included from ../inst/include/LefkoUtils.h:8,
                 from DataManagement.cpp:5:
../inst/include/basic_funcs/mat_stuff.h: In function ‘Rcpp::DataFrame LefkoMats::supp_reassess(Rcpp::DataFrame, bool, Rcpp::Nullable<Rcpp::DataFrame_Impl<Rcpp::PreserveStorage> >, Rcpp::Nullable<Rcpp::DataFrame_Impl<Rcpp::PreserveStorage> >)’:
../inst/include/basic_funcs/mat_stuff.h:1672:12: warning: variable ‘esta2_used’ set but not used [-Wunused-but-set-variable]
 1672 |       bool esta2_used {false};
      |            ^~~~~~~~~~
DataManagement.cpp: In function ‘Rcpp::List bootstrap3(Rcpp::RObject, Rcpp::Nullable<Rcpp::RObject_Impl<Rcpp::PreserveStorage> >, Rcpp::Nullable<Rcpp::RObject_Impl<Rcpp::PreserveStorage> >, Rcpp::Nullable<Rcpp::RObject_Impl<Rcpp::PreserveStorage> >, Rcpp::Nullable<Rcpp::RObject_Impl<Rcpp::PreserveStorage> >, Rcpp::Nullable<Rcpp::RObject_Impl<Rcpp::PreserveStorage> >, Rcpp::Nullable<Rcpp::RObject_Impl<Rcpp::PreserveStorage> >, Rcpp::Nullable<Rcpp::RObject_Impl<Rcpp::PreserveStorage> >, Rcpp::Nullable<Rcpp::RObject_Impl<Rcpp::PreserveStorage> >, Rcpp::Nullable<Rcpp::RObject_Impl<Rcpp::PreserveStorage> >, Rcpp::Nullable<Rcpp::RObject_Impl<Rcpp::PreserveStorage> >)’:
DataManagement.cpp:5778:8: warning: variable ‘rename_bool’ set but not used [-Wunused-but-set-variable]
 5778 |   bool rename_bool {false};
      |        ^~~~~~~~~~~
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ErrorChecks.cpp -o ErrorChecks.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ExtraFunctions.cpp -o ExtraFunctions.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Mats2.cpp -o Mats2.o
In file included from ../inst/include/LefkoUtils.h:8,
                 from Mats2.cpp:3:
../inst/include/basic_funcs/mat_stuff.h: In function ‘Rcpp::DataFrame LefkoMats::supp_reassess(Rcpp::DataFrame, bool, Rcpp::Nullable<Rcpp::DataFrame_Impl<Rcpp::PreserveStorage> >, Rcpp::Nullable<Rcpp::DataFrame_Impl<Rcpp::PreserveStorage> >)’:
../inst/include/basic_funcs/mat_stuff.h:1672:12: warning: variable ‘esta2_used’ set but not used [-Wunused-but-set-variable]
 1672 |       bool esta2_used {false};
      |            ^~~~~~~~~~
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O2 -Wall -pedantic -mtune=native   -c MatsNProj.cpp -o MatsNProj.o
In file included from ../inst/include/LefkoUtils.h:8,
                 from MatsNProj.cpp:7:
../inst/include/basic_funcs/mat_stuff.h: In function ‘Rcpp::DataFrame LefkoMats::supp_reassess(Rcpp::DataFrame, bool, Rcpp::Nullable<Rcpp::DataFrame_Impl<Rcpp::PreserveStorage> >, Rcpp::Nullable<Rcpp::DataFrame_Impl<Rcpp::PreserveStorage> >)’:
../inst/include/basic_funcs/mat_stuff.h:1672:12: warning: variable ‘esta2_used’ set but not used [-Wunused-but-set-variable]
 1672 |       bool esta2_used {false};
      |            ^~~~~~~~~~
In file included from ../inst/include/LefkoUtils.h:7:
../inst/include/basic_funcs/main_utils.h: In function ‘Rcpp::List LefkoUtils::modelextract(Rcpp::RObject, const Rcpp::DataFrame&, const Rcpp::CharacterVector&, const Rcpp::CharacterVector&, Rcpp::RObject, Rcpp::RObject, Rcpp::RObject, Rcpp::RObject, bool)’:
../inst/include/basic_funcs/main_utils.h:4212:21: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without
 4212 |   inline Rcpp::List modelextract(RObject object, const DataFrame& paramnames,
      |                     ^~~~~~~~~~~~
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ModelSelection.cpp -o ModelSelection.o
In file included from ../inst/include/LefkoUtils.h:8,
                 from ModelSelection.cpp:2:
../inst/include/basic_funcs/mat_stuff.h: In function ‘Rcpp::DataFrame LefkoMats::supp_reassess(Rcpp::DataFrame, bool, Rcpp::Nullable<Rcpp::DataFrame_Impl<Rcpp::PreserveStorage> >, Rcpp::Nullable<Rcpp::DataFrame_Impl<Rcpp::PreserveStorage> >)’:
../inst/include/basic_funcs/mat_stuff.h:1672:12: warning: variable ‘esta2_used’ set but not used [-Wunused-but-set-variable]
 1672 |       bool esta2_used {false};
      |            ^~~~~~~~~~
In file included from ../inst/include/LefkoUtils.h:7:
../inst/include/basic_funcs/main_utils.h: In function ‘Rcpp::List LefkoUtils::modelextract(Rcpp::RObject, const Rcpp::DataFrame&, const Rcpp::CharacterVector&, const Rcpp::CharacterVector&, Rcpp::RObject, Rcpp::RObject, Rcpp::RObject, Rcpp::RObject, bool)’:
../inst/include/basic_funcs/main_utils.h:4212:21: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without
 4212 |   inline Rcpp::List modelextract(RObject object, const DataFrame& paramnames,
      |                     ^~~~~~~~~~~~
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O2 -Wall -pedantic -mtune=native   -c PopChar.cpp -o PopChar.o
In file included from ../inst/include/LefkoUtils.h:8,
                 from PopChar.cpp:3:
../inst/include/basic_funcs/mat_stuff.h: In function ‘Rcpp::DataFrame LefkoMats::supp_reassess(Rcpp::DataFrame, bool, Rcpp::Nullable<Rcpp::DataFrame_Impl<Rcpp::PreserveStorage> >, Rcpp::Nullable<Rcpp::DataFrame_Impl<Rcpp::PreserveStorage> >)’:
../inst/include/basic_funcs/mat_stuff.h:1672:12: warning: variable ‘esta2_used’ set but not used [-Wunused-but-set-variable]
 1672 |       bool esta2_used {false};
      |            ^~~~~~~~~~
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O2 -Wall -pedantic -mtune=native   -c PopDyn2.cpp -o PopDyn2.o
In file included from ../inst/include/LefkoUtils.h:8,
                 from PopDyn2.cpp:3:
../inst/include/basic_funcs/mat_stuff.h: In function ‘Rcpp::DataFrame LefkoMats::supp_reassess(Rcpp::DataFrame, bool, Rcpp::Nullable<Rcpp::DataFrame_Impl<Rcpp::PreserveStorage> >, Rcpp::Nullable<Rcpp::DataFrame_Impl<Rcpp::PreserveStorage> >)’:
../inst/include/basic_funcs/mat_stuff.h:1672:12: warning: variable ‘esta2_used’ set but not used [-Wunused-but-set-variable]
 1672 |       bool esta2_used {false};
      |            ^~~~~~~~~~
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o lefko3.so DataManagement.o ErrorChecks.o ExtraFunctions.o Mats2.o MatsNProj.o ModelSelection.o PopChar.o PopDyn2.o RcppExports.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR
installing to /home/hornik/tmp/CRAN_recheck/lefko3.Rcheck/00LOCK-lefko3/00new/lefko3/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lefko3)