downloading reverse dependencies ... downloading adapt3_1.0.1.tar.gz ... ok installing dependencies ‘lefko3’, ‘popbio’, ‘Rcompadre’ also installing the dependency ‘popdemo’ begin installing package ‘popdemo’ begin installing package ‘popbio’ begin installing package ‘lefko3’ * installing *source* package ‘popbio’ ... ** this is package ‘popbio’ version ‘2.8’ ** package ‘popbio’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (popbio) * installing *source* package ‘popdemo’ ... ** this is package ‘popdemo’ version ‘1.3-2’ ** package ‘popdemo’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (popdemo) begin installing package ‘Rcompadre’ * installing *source* package ‘Rcompadre’ ... ** this is package ‘Rcompadre’ version ‘1.4.0’ ** package ‘Rcompadre’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcompadre) * installing *source* package ‘lefko3’ ... ** this is package ‘lefko3’ version ‘6.5.1’ ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-1) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpOIFBud/R.INSTALL117b0b77be9722/lefko3/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c DataManagement.cpp -o DataManagement.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c ErrorChecks.cpp -o ErrorChecks.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c ExtraFunctions.cpp -o ExtraFunctions.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c Mats2.cpp -o Mats2.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c MatsNProj.cpp -o MatsNProj.o In file included from ../inst/include/LefkoUtils.h:7, from MatsNProj.cpp:7: ../inst/include/basic_funcs/main_utils.h: In function ‘Rcpp::List LefkoUtils::modelextract(Rcpp::RObject, const Rcpp::DataFrame&, const Rcpp::CharacterVector&, const Rcpp::CharacterVector&, Rcpp::RObject, Rcpp::RObject, Rcpp::RObject, Rcpp::RObject, bool)’: ../inst/include/basic_funcs/main_utils.h:3849:21: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without 3849 | inline Rcpp::List modelextract(RObject object, const DataFrame& paramnames, | ^~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c ModelSelection.cpp -o ModelSelection.o In file included from ../inst/include/LefkoUtils.h:7, from ModelSelection.cpp:2: ../inst/include/basic_funcs/main_utils.h: In function ‘Rcpp::List LefkoUtils::modelextract(Rcpp::RObject, const Rcpp::DataFrame&, const Rcpp::CharacterVector&, const Rcpp::CharacterVector&, Rcpp::RObject, Rcpp::RObject, Rcpp::RObject, Rcpp::RObject, bool)’: ../inst/include/basic_funcs/main_utils.h:3849:21: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without 3849 | inline Rcpp::List modelextract(RObject object, const DataFrame& paramnames, | ^~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c PopChar.cpp -o PopChar.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c PopDyn2.cpp -o PopDyn2.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o lefko3.so DataManagement.o ErrorChecks.o ExtraFunctions.o Mats2.o MatsNProj.o ModelSelection.o PopChar.o PopDyn2.o RcppExports.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpOIFBud/R.INSTALL117b0b77be9722/lefko3/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-lefko3/00new/lefko3/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lefko3) checking lefko3_6.5.1.tar.gz ... checking adapt3_1.0.1.tar.gz ... Depends: Package: lefko3 Depends: R (>= 3.5.0) Imports: Rcpp (>= 1.0.5), glmmTMB, lme4, MASS, Matrix, methods, MuMIn, pscl, rlang, stats, VGAM, grDevices LinkingTo: Rcpp, RcppArmadillo, BH Timings: user system elapsed lefko3 552.569 17.102 575.494 Results: Check status summary: OK Source packages 1 Reverse depends 1 Check results summary: lefko3 ... OK rdepends_adapt3 ... OK