context('latrendBatch') rngReset() test_that('single method and data, cartesian=TRUE', { models = latrendBatch(mTest, testLongData, cartesian = TRUE) expect_is(models, 'lcModels') expect_length(models, 1) expect_equal(deparse(getCall(models[[1]])$data), 'testLongData') }) test_that('single method and data, cartesian=FALSE', { models = latrendBatch(mTest, testLongData, cartesian = FALSE) expect_is(models, 'lcModels') expect_length(models, 1) expect_equal(deparse(getCall(models[[1]])$data), 'testLongData') }) test_that('multiple datasets', { methods = lcMethods(mTest, nClusters = 1:2) models = latrendBatch( methods, data = .(testLongData, testLongData[time < .5], testLongData[time >= .5]), cartesian = TRUE) expect_is(models, 'lcModels') expect_length(models, 2*3) expect_equal(deparse(getCall(models[[1]])$data), 'testLongData') expect_equal(deparse(getCall(models[[2]])$data), 'testLongData[time < 0.5]') expect_equal(deparse(getCall(models[[3]])$data), 'testLongData[time >= 0.5]') }) test_that('single entry from a datasets list', { datasets = list(testLongData, testLongData) models = latrendBatch(mTest, data = datasets[[1]]) expect_length(models, 1) expect_equal(deparse(getCall(models[[1]])$data), 'datasets[[1]]') }) test_that('datasets list subset', { datasets = list(testLongData, testLongData, testLongData) models = latrendBatch(mTest, data = datasets[c(2,3)]) expect_length(models, 2) expect_equal(deparse(getCall(models[[1]])$data), 'datasets[c(2, 3)][[1]]') expect_equal(deparse(getCall(models[[2]])$data), 'datasets[c(2, 3)][[2]]') }) test_that('datasets list', { methods = lcMethods(mTest, nClusters = 1:2) dataList = list( testLongData, testLongData[time < .5], testLongData[time >= .5] ) models = latrendBatch(methods, data = dataList, cartesian = TRUE) expect_is(models, 'lcModels') expect_length(models, 2*3) expect_equal(deparse(getCall(models[[1]])$data), 'dataList[[1]]') expect_equal(deparse(getCall(models[[2]])$data), 'dataList[[2]]') expect_equal(deparse(getCall(models[[3]])$data), 'dataList[[3]]') }) test_that('datasets list, cartesian=FALSE', { methods = lcMethods(mTest, nClusters = 1:3) dataList = list( testLongData, testLongData[time < .5], testLongData[time >= .5] ) models = latrendBatch(methods, data = dataList, cartesian = FALSE) expect_is(models, 'lcModels') expect_length(models, 3) expect_equal(deparse(getCall(models[[1]])$data), 'dataList[[1]]') expect_equal(deparse(getCall(models[[2]])$data), 'dataList[[2]]') expect_equal(deparse(getCall(models[[3]])$data), 'dataList[[3]]') }) test_that('single method, multiple datasets', { dataList = list( testLongData, testLongData[time < .5], testLongData[time >= .5] ) models = latrendBatch(mTest, data = dataList, cartesian = TRUE) expect_is(models, 'lcModels') expect_length(models, 3) expect_equal(deparse(getCall(models[[1]])$data), 'dataList[[1]]') expect_equal(deparse(getCall(models[[2]])$data), 'dataList[[2]]') expect_equal(deparse(getCall(models[[3]])$data), 'dataList[[3]]') }) test_that('stop on error', { methods = list(mTest, mError) expect_error({ latrendBatch(methods, data = testLongData) }) }) test_that('error removal', { methods = list(mTest, mError) models = latrendBatch(methods, data = testLongData, errorHandling = 'remove') expect_is(models, 'lcModels') expect_length(models, 1) }) test_that('error passing', { methods = list(mTest, mError) expect_warning({ models = latrendBatch(methods, data = testLongData, errorHandling = 'pass') }) expect_is(models, 'list') expect_length(models, 2) }) test_that('unique default seeds assigned to method specs', { methods = list(mRandom, mRandom) models = latrendBatch(methods, data = testLongData) seeds = lapply(models, getLcMethod) %>% vapply('[[', 'seed', FUN.VALUE = 0) expect_equal(uniqueN(seeds), length(methods)) }) test_that('method seeds are preserved in method specs', { methods = list(mTest, mRandom, update(mTest, seed = 3)) models = latrendBatch(methods, data = testLongData) seeds = lapply(models, getLcMethod) %>% vapply('[[', 'seed', FUN.VALUE = 0) expect_equivalent(seeds[1], methods[[1]]$seed) expect_false(seeds[2] == seeds[1] || seeds[2] == seeds[3]) expect_equivalent(seeds[3], methods[[3]]$seed) }) test_that('model calls can be used to refit, with identical result', { models = latrendBatch(replicate(2, mRandom), data = testLongData) refits = list( eval(getCall(models[[1]])), eval(getCall(models[[2]])) ) expect_is(refits[[1]], 'lcModel') expect_is(refits[[2]], 'lcModel') expect_equivalent(getLcMethod(models[[1]])$seed, getLcMethod(refits[[1]])$seed) expect_equivalent(getLcMethod(models[[2]])$seed, getLcMethod(refits[[2]])$seed) }) test_that('repeated probabilistic method calls yield different results', { method = lcMethodTestRandom(alpha = 1, nClusters = 3) models = latrendBatch(replicate(2, method), data = testLongData) expect_true(!isTRUE(all.equal(trajectoryAssignments(models[[1]]), trajectoryAssignments(models[[2]])))) }) test_that('original method seeds have effect', { method = lcMethodTestRandom(alpha = 1, nClusters = 3, seed = 2) refModel = latrend(method, data = testLongData) batchModels = latrendBatch(list(mTest, method), data = testLongData) expect_equivalent(trajectoryAssignments(refModel), trajectoryAssignments(batchModels[[2]])) })