context('twostep models') skip_if_not_installed('lme4') rngReset() tests = DEFAULT_LATREND_TESTS make.gckm = function(id, response, ...) { m = lcMethodGCKM(formula = as.formula(sprintf('%s ~ (1 | %s)', response, id)), id = id, ...) evaluate(m) # dont chain using magrittr because this leads to a wrongful evaluation of nClusters (no clue why) } test_that('specify', { repfun = function(method, data, ...) { as.data.table(data)[, mean(Value), by = Traj]$V1 %>% cbind() } clusfun = function(method, data, repMat, ...) { clusters = factor(repMat[,1] > 0, levels = c(F,T), labels = c('Low', 'High')) lcModelPartition(response = method$response, data = data, trajectoryAssignments = clusters) } method = lcMethodTestTwoStep(representationStep = repfun, clusterStep = clusfun, standardize = scale) model = expect_silent(latrend(method, testLongData)) expect_valid_lcModel(model) }) test_that('gckm', { expect_true({ test.latrend('lcMethodGCKM', instantiator = make.gckm, tests = tests) }) }) test_that('gckm through latrendBatch', { method = make.gckm(id = 'Traj', response = 'Value') models = latrendBatch(lcMethods(method, nClusters = 1:3), testLongData) expect_length(models, 3) })