* installing *source* package ‘landsepi’ ... ** this is package ‘landsepi’ version ‘1.5.3’ ** using staged installation configure: /home/hornik/tmp/R checking whether to build debug version... no checking whether to build profiling version... no configure: /home/hornik/tmp/R checking for Rcpp package... 'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. 'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. 'CxxFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. yes checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether clang++-21 -std=gnu++17 accepts -g... yes checking for clang++-21 -std=gnu++17 option to enable C++11 features... none needed checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_blas_dgemm in -lgsl... yes configure: creating ./config.status config.status: creating src/Makevars ** libs specified C++17 using C++ compiler: ‘Debian clang version 21.1.8 (1+b1)’ using C++17 clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c Basic_patho.cpp -o Basic_patho.o clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c Croptype.cpp -o Croptype.o clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c Cultivar.cpp -o Cultivar.o clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c Gene.cpp -o Gene.o clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c Model.cpp -o Model.o Model.cpp:1271:10: warning: unused variable 'duration' [-Wunused-variable] 1271 | auto duration = duration_cast(stop - start); | ^~~~~~~~ 1 warning generated. clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c Treatment.cpp -o Treatment.o clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c functions.cpp -o functions.o clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c gprof.cpp -o gprof.o clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c initialisation.cpp -o initialisation.o clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c printReadWrite.cpp -o printReadWrite.o clang++-21 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o landsepi.so Basic_patho.o Croptype.o Cultivar.o Gene.o Model.o RcppExports.o Treatment.o functions.o gprof.o initialisation.o printReadWrite.o -Wl,-O1 -lgsl -lgslcblas -lm -L/home/hornik/tmp/R/lib -lR installing to /srv/hornik/tmp/CRAN_pretest/landsepi.Rcheck/00LOCK-landsepi/00new/landsepi/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (landsepi)