* using log directory ‘/srv/hornik/tmp/CRAN_pretest/laminr.Rcheck’
* using R Under development (unstable) (2025-03-10 r87916)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (1+b1)
    Debian flang-new version 19.1.7 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘laminr/DESCRIPTION’ ... OK
* this is package ‘laminr’ version ‘1.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/6s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘laminr’ can be installed ... [4s/4s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [6s/6s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [2s/2s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [7s/3s] ERROR
  Running ‘testthat.R’ [7s/2s]
Running R code in ‘testthat.R’ had CPU time 2.9 times elapsed time
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(laminr)
  > 
  > test_check("laminr")
  [ FAIL 1 | WARN 0 | SKIP 10 | PASS 20 ]
  
  ══ Skipped tests (10) ══════════════════════════════════════════════════════════
  • On CRAN (9): 'test-Registry.R:1:1', 'test-checks.R:25:3',
    'test-checks.R:61:3', 'test-checks.R:73:3', 'test-import.R:1:1',
    'test-install.R:1:1', 'test-unwrap-python.R:1:1', 'test-utils.R:2:3',
    'test-wrap-python.R:1:1'
  • reticulate::py_module_available("anndata") is not TRUE (1):
    'test-file_loaders.R:42:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-reticulate-utils.R:2:3'): py_to_r_nonull() works ───────────────
  <python.builtin.ModuleNotFoundError/python.builtin.ImportError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition>
  Error in `py_module_import(module, convert = convert)`: ModuleNotFoundError: No module named 'pandas'
  Run `reticulate::py_last_error()` for details.
  Backtrace:
      ▆
   1. └─reticulate::import("pandas", convert = FALSE) at test-reticulate-utils.R:2:3
   2.   └─reticulate:::py_module_import(module, convert = convert)
  
  [ FAIL 1 | WARN 0 | SKIP 10 | PASS 20 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [2s/2s] OK
* checking PDF version of manual ... [2s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR