installing dependencies ‘fso’, ‘Rtsne’ also installing the dependencies ‘Rcpp’, ‘labdsv’ begin installing package ‘Rcpp’ * installing *source* package ‘Rcpp’ ... ** this is package ‘Rcpp’ version ‘1.1.1’ ** package ‘Rcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYA37F6/R.INSTALLdc3955e12f670/Rcpp/src' g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c api.cpp -o api.o g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c attributes.cpp -o attributes.o g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c barrier.cpp -o barrier.o g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c date.cpp -o date.o g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c module.cpp -o module.o g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c rcpp_init.cpp -o rcpp_init.o g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYA37F6/R.INSTALLdc3955e12f670/Rcpp/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-Rcpp/00new/Rcpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcpp) begin installing package ‘Rtsne’ * installing *source* package ‘Rtsne’ ... ** this is package ‘Rtsne’ version ‘0.17’ ** package ‘Rtsne’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKYpTFo/R.INSTALLdc3f61e9696e/Rtsne/src' g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c RcppExports.cpp -o RcppExports.o g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c Rtsne.cpp -o Rtsne.o g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c normalize_input.cpp -o normalize_input.o g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c sptree.cpp -o sptree.o sptree.cpp:403: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 403 | #pragma omp parallel for schedule(static) num_threads(num_threads) g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c tsne.cpp -o tsne.o tsne.cpp:257: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 257 | #pragma omp parallel for schedule(guided) num_threads(num_threads) tsne.cpp:564: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 564 | #pragma omp parallel for schedule(guided) num_threads(num_threads) tsne.cpp:583: warning: ignoring ‘#pragma omp atomic’ [-Wunknown-pragmas] 583 | #pragma omp atomic tsne.cpp:607: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 607 | #pragma omp parallel for schedule(guided) num_threads(num_threads) tsne.cpp:618: warning: ignoring ‘#pragma omp atomic’ [-Wunknown-pragmas] 618 | #pragma omp atomic g++-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o Rtsne.so RcppExports.o Rtsne.o normalize_input.o sptree.o tsne.o -llapack -L/home/hornik/tmp/R-d-gcc-xtra/lib -lRblas -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKYpTFo/R.INSTALLdc3f61e9696e/Rtsne/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-Rtsne/00new/Rtsne/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rtsne) begin installing package ‘labdsv’ * installing *source* package ‘labdsv’ ... ** this is package ‘labdsv’ version ‘2.3-1’ ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0zzlzY/R.INSTALLdc53d6c906d44/labdsv/src' gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c dsvdis.f90 -o dsvdis.o gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c euclid.f90 -o euclid.o gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c indval.f90 -o indval.o gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c init.c -o init.o gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c ismetric.f90 -o ismetric.o gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c metric.f90 -o metric.o gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c orddist.f90 -o orddist.o gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c pip.f90 -o pip.o gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c random.c -o random.o gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c stepdist.f90 -o stepdist.o gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c thull.f90 -o thull.o gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o labdsv.so dsvdis.o euclid.o indval.o init.o ismetric.o metric.o orddist.o pip.o random.o stepdist.o thull.o -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0zzlzY/R.INSTALLdc53d6c906d44/labdsv/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-labdsv/00new/labdsv/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (labdsv) begin installing package ‘fso’ * installing *source* package ‘fso’ ... ** this is package ‘fso’ version ‘2.1-4’ ** package ‘fso’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpvu4Xmj/R.INSTALLdc6981a3211f2/fso/src' gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -c fso_init.c -o fso_init.o gfortran-15 -fsanitize=address -fpic -g -O2 -Wall -pedantic -mtune=native -c thull.f -o thull.o gcc-15 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -shared -g -O2 -Wall -pedantic -mtune=native -Wno-stringop-truncation -fpic -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o fso.so fso_init.o thull.o -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpvu4Xmj/R.INSTALLdc6981a3211f2/fso/src' installing to /home/hornik/tmp/CRAN_special_gcc-san/Library/00LOCK-fso/00new/fso/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fso) checking labdsv_2.3-1.tar.gz ... Depends: Package: labdsv Depends: R (>= 3.0), mgcv Imports: cluster, Rtsne, MASS Timings: user system elapsed labdsv 172.207 16.144 189.13 Results: Check status summary: OK Source packages 1 Check results summary: labdsv ... OK