downloading reverse dependencies ‘ecan’, ‘fso’, ‘maotai’, ‘ecoCopula’, ‘RVAideMemoire’ trying URL 'file:///data/Repositories/CRAN/src/contrib/ecan_0.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/fso_2.1-4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/maotai_0.3.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ecoCopula_1.0.6.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/RVAideMemoire_0.9-83-12.tar.gz' installing dependencies ‘dgof’, ‘EMT’, ‘fso’, ‘labdsv’, ‘mvabund’, ‘mvnormtest’, ‘RGCCA’, ‘rlang’ begin installing package ‘rlang’ begin installing package ‘dgof’ begin installing package ‘EMT’ begin installing package ‘mvnormtest’ begin installing package ‘labdsv’ * installing *source* package ‘mvnormtest’ ... ** this is package ‘mvnormtest’ version ‘0.1-9-3’ ** package ‘mvnormtest’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mvnormtest) * installing *source* package ‘EMT’ ... ** this is package ‘EMT’ version ‘1.3.2’ ** package ‘EMT’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EMT) * installing *source* package ‘dgof’ ... ** this is package ‘dgof’ version ‘1.5.1’ ** package ‘dgof’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpU8adML/R.INSTALLde9371f901bda/dgof/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ks.c -o ks.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o dgof.so init.o ks.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpU8adML/R.INSTALLde9371f901bda/dgof/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-dgof/00new/dgof/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dgof) * installing *source* package ‘labdsv’ ... ** this is package ‘labdsv’ version ‘2.3-1’ ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBl1l1g/R.INSTALLde93d284c1635/labdsv/src' gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c dsvdis.f90 -o dsvdis.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c euclid.f90 -o euclid.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c indval.f90 -o indval.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c ismetric.f90 -o ismetric.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c metric.f90 -o metric.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c orddist.f90 -o orddist.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c pip.f90 -o pip.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c random.c -o random.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c stepdist.f90 -o stepdist.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c thull.f90 -o thull.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o labdsv.so dsvdis.o euclid.o indval.o init.o ismetric.o metric.o orddist.o pip.o random.o stepdist.o thull.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBl1l1g/R.INSTALLde93d284c1635/labdsv/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-labdsv/00new/labdsv/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (labdsv) begin installing package ‘fso’ * installing *source* package ‘fso’ ... ** this is package ‘fso’ version ‘2.1-4’ ** package ‘fso’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmppJz1W8/R.INSTALLdeac347dd5176/fso/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fso_init.c -o fso_init.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c thull.f -o thull.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o fso.so fso_init.o thull.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmppJz1W8/R.INSTALLdeac347dd5176/fso/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fso/00new/fso/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fso) * installing *source* package ‘rlang’ ... ** this is package ‘rlang’ version ‘1.2.0’ ** package ‘rlang’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfCQ4fy/R.INSTALLde93f5de317d/rlang/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c capture.c -o capture.o touch internal.c gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c internal.c -o internal.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rlang.c -o rlang.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c version.c -o version.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o rlang.so capture.o internal.o rlang.o version.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfCQ4fy/R.INSTALLde93f5de317d/rlang/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rlang/00new/rlang/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rlang) begin installing package ‘mvabund’ begin installing package ‘RGCCA’ * installing *source* package ‘RGCCA’ ... ** this is package ‘RGCCA’ version ‘3.0.3’ ** package ‘RGCCA’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RGCCA) * installing *source* package ‘mvabund’ ... ** this is package ‘mvabund’ version ‘4.2.8’ ** package ‘mvabund’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpykXUmM/R.INSTALLdeb646494ecf6/mvabund/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I../inst/include -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I../inst/include -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Rinterface.cpp -o Rinterface.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I../inst/include -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c anova.cpp -o anova.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I../inst/include -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c calctest.cpp -o calctest.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I../inst/include -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c glm.cpp -o glm.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I../inst/include -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c glmtest.cpp -o glmtest.o glmtest.cpp: In member function ‘int GlmTest::resampNonCase(glm*, gsl_matrix*, unsigned int)’: glmtest.cpp:849:23: warning: ‘tmp’ may be used uninitialized [-Wmaybe-uninitialized] 849 | gsl_sort_index(permid, tmp, 1, nRows); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from resampTest.h:26, from glmtest.cpp:5: /usr/include/gsl/gsl_sort_double.h:41:6: note: by argument 2 of type ‘const double*’ to ‘void gsl_sort_index(size_t*, const double*, size_t, size_t)’ declared here 41 | void gsl_sort_index (size_t * p, const double * data, const size_t stride, const size_t n); | ^~~~~~~~~~~~~~ glmtest.cpp:876:23: warning: ‘tmp’ may be used uninitialized [-Wmaybe-uninitialized] 876 | gsl_sort_index(permid, tmp, 1, nRows); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/gsl/gsl_sort_double.h:41:6: note: by argument 2 of type ‘const double*’ to ‘void gsl_sort_index(size_t*, const double*, size_t, size_t)’ declared here 41 | void gsl_sort_index (size_t * p, const double * data, const size_t stride, const size_t n); | ^~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I../inst/include -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c io.cpp -o io.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I../inst/include -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rnd.cpp -o rnd.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I../inst/include -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c simutility.cpp -o simutility.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -I../inst/include -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c summary.cpp -o summary.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o mvabund.so RcppExports.o Rinterface.o anova.o calctest.o glm.o glmtest.o io.o rnd.o simutility.o summary.o -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpykXUmM/R.INSTALLdeb646494ecf6/mvabund/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mvabund/00new/mvabund/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mvabund) checking labdsv_2.3-1.tar.gz ... checking ecan_0.2.1.tar.gz ... checking fso_2.1-4.tar.gz ... checking maotai_0.3.0.tar.gz ... checking ecoCopula_1.0.6.tar.gz ... checking RVAideMemoire_0.9-83-12.tar.gz ... Depends: Package: labdsv Depends: R (>= 3.0), mgcv Imports: cluster, Rtsne, MASS Timings: user system elapsed labdsv 57.809 5.841 63.935 Results: Check status summary: OK Source packages 1 Reverse depends 5 Check results summary: labdsv ... OK rdepends_ecan ... OK rdepends_ecoCopula ... OK rdepends_fso ... OK rdepends_maotai ... OK rdepends_RVAideMemoire ... OK