* using log directory ‘/srv/hornik/tmp/CRAN_pretest/lab2clean.Rcheck’ * using R Under development (unstable) (2024-08-28 r87070) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.8 (9) Debian flang-new version 18.1.8 (9) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘lab2clean/DESCRIPTION’ ... OK * this is package ‘lab2clean’ version ‘1.0.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/4s] NOTE Maintainer: ‘Ahmed Zayed ’ New submission Possibly misspelled words in DESCRIPTION: pre (9:216) Found the following (possibly) invalid DOIs: DOI: 10.1186/s12911-024-02652-7 From: DESCRIPTION Status: 404 Message: Not Found * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘lab2clean’ can be installed ... [2s/2s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s/3s] OK * checking Rd files ... [0s/0s] NOTE checkRd: (-1) Function_1_dummy.Rd:18: Lost braces; missing escapes or markup? 18 | \item {raw_result}: {The raw result} | ^ checkRd: (-1) Function_1_dummy.Rd:19: Lost braces; missing escapes or markup? 19 | \item {frequency}: {The frequency of the raw result} | ^ checkRd: (-1) Function_2_dummy.Rd:18: Lost braces; missing escapes or markup? 18 | \item {patient_id}: {It indicates the identifier of the tested patient} | ^ checkRd: (-1) Function_2_dummy.Rd:19: Lost braces; missing escapes or markup? 19 | \item {lab_datetime1}: {It indicates date or datetime of the laboratory test} | ^ checkRd: (-1) Function_2_dummy.Rd:20: Lost braces; missing escapes or markup? 20 | \item {loinc_code}: {It indicates the LOINC code of the laboratory test} | ^ checkRd: (-1) Function_2_dummy.Rd:21: Lost braces; missing escapes or markup? 21 | \item {result_value}: {It indicates the quantitative result values for validation} | ^ checkRd: (-1) Function_2_dummy.Rd:22: Lost braces; missing escapes or markup? 22 | \item {result_unit}: {It indicates the result units in a UCUM-valid format} | ^ checkRd: (-1) common_words.Rd:18: Lost braces; missing escapes or markup? 18 | \item {Language}: {Contains 19 different languages} | ^ checkRd: (-1) common_words.Rd:19: Lost braces; missing escapes or markup? 19 | \item {Positive}: {Displays the word Positive in 19 different languages} | ^ checkRd: (-1) common_words.Rd:20: Lost braces; missing escapes or markup? 20 | \item {Negative}: {Displays the word Negative in 19 different languages} | ^ checkRd: (-1) common_words.Rd:21: Lost braces; missing escapes or markup? 21 | \item {Not_detected}: {Displays the word Not_detected in 19 different languages} | ^ checkRd: (-1) common_words.Rd:22: Lost braces; missing escapes or markup? 22 | \item {High}: {Displays the word High in 19 different languages} | ^ checkRd: (-1) common_words.Rd:23: Lost braces; missing escapes or markup? 23 | \item {Low}: {Displays the word Low in 19 different languages} | ^ checkRd: (-1) common_words.Rd:24: Lost braces; missing escapes or markup? 24 | \item {Normal}: {Displays the word Normal in 19 different languages} | ^ checkRd: (-1) common_words.Rd:25: Lost braces; missing escapes or markup? 25 | \item {Sample}: {Displays the word Sample in 19 different languages} | ^ checkRd: (-1) common_words.Rd:26: Lost braces; missing escapes or markup? 26 | \item {Specimen}: {Displays the word Specimen in 19 different languages} | ^ checkRd: (-1) logic_rules.Rd:18: Lost braces; missing escapes or markup? 18 | \item {rule_id}: {The rule id} | ^ checkRd: (-1) logic_rules.Rd:19: Lost braces; missing escapes or markup? 19 | \item {rule_index}: {The rule index} | ^ checkRd: (-1) logic_rules.Rd:20: Lost braces; missing escapes or markup? 20 | \item {rule_part}: {The rule part} | ^ checkRd: (-1) logic_rules.Rd:21: Lost braces; missing escapes or markup? 21 | \item {rule_part_type}: {The rule part type} | ^ checkRd: (-1) reportable_interval.Rd:18: Lost braces; missing escapes or markup? 18 | \item {interval_loinc_code}: {The interval of the loinc code} | ^ checkRd: (-1) reportable_interval.Rd:19: Lost braces; missing escapes or markup? 19 | \item {UCUM_unit}: {The UCUM unit} | ^ checkRd: (-1) reportable_interval.Rd:20: Lost braces; missing escapes or markup? 20 | \item {low_reportable_limit}: {The lower reportable limit} | ^ checkRd: (-1) reportable_interval.Rd:21: Lost braces; missing escapes or markup? 21 | \item {high_reportable_limit}: {The higher reportable limit} | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... NONE * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [3s/3s] OK * checking PDF version of manual ... [3s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 NOTEs