* using log directory ‘/srv/hornik/tmp/CRAN_pretest/kollaR.Rcheck’ * using R Under development (unstable) (2025-01-30 r87669) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.6 (1+b1) Debian flang-new version 19.1.6 (1+b1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘kollaR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘kollaR’ version ‘1.0.1’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [2s/2s] WARNING Maintainer: ‘Johan Lundin Kleberg, Stockholm University ’ The display-name part of the maintainer field should be enclosed in "" New submission Non-FOSS package license (CC BY-ND) Possibly misspelled words in DESCRIPTION: AOI (12:50) DT (11:114) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘kollaR’ can be installed ... [4s/4s] WARNING Found the following significant warnings: Warning: replacing previous import ‘plotly::last_plot’ by ‘ggplot2::last_plot’ when loading ‘kollaR’ See ‘/srv/hornik/tmp/CRAN_pretest/kollaR.Rcheck/00install.out’ for details. * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... WARNING Non-standard license specification: CC BY-ND Standardizable: FALSE Author field differs from that derived from Authors@R Author: ‘Johan Lundin Kleberg’ Authors@R: ‘Johan Lundin Kleberg [aut, cre]’ Maintainer field differs from that derived from Authors@R Maintainer: ‘Johan Lundin Kleberg, Stockholm University ’ Authors@R: ‘Johan Lundin Kleberg ’ * checking top-level files ... NOTE Non-standard file/directory found at top level: ‘CITATION’ * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... NOTE Found the following CITATION file in a non-standard place: CITATION Most likely ‘inst/CITATION’ should be used instead. * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [6s/6s] NOTE animated_fixation_plot: no visible global function definition for ‘setNames’ cluster2m: no visible global function definition for ‘sd’ cluster2m: no visible binding for global variable ‘duration’ filt_plot_2d: no visible global function definition for ‘tail’ filt_plot_2d: no visible binding for global variable ‘x’ filt_plot_2d: no visible binding for global variable ‘y’ filt_plot_2d: no visible binding for global variable ‘fixation.filter’ filt_plot_2d: no visible binding for global variable ‘raw.x’ filt_plot_2d: no visible binding for global variable ‘raw.y’ filt_plot_temporal: no visible global function definition for ‘setNames’ find.transition.weights: no visible binding for global variable ‘x.raw’ find.transition.weights: no visible binding for global variable ‘y.raw’ find.transition.weights: no visible global function definition for ‘kmeans’ idt_filter: no visible binding for global variable ‘duration’ interpolate_with_margin: no visible global function definition for ‘median’ ivt_filter: no visible binding for global variable ‘duration’ ivt_filter: no visible binding for global variable ‘missing.samples’ plot_filter_results: no visible binding for global variable ‘algorithm’ plot_filter_results: no visible binding for global variable ‘ms’ plot_sample_velocity: no visible global function definition for ‘tail’ plot_sample_velocity: no visible binding for global variable ‘velocity’ plot_sample_velocity: no visible binding for global variable ‘x’ plot_sample_velocity: no visible binding for global variable ‘y’ plot_velocity_profiles: no visible binding for global variable ‘velocity’ plot_velocity_profiles: no visible binding for global variable ‘amplitude_label’ process_gaze: no visible global function definition for ‘median’ static_plot: no visible binding for global variable ‘onset’ static_plot: no visible binding for global variable ‘offset’ static_plot: no visible binding for global variable ‘x’ static_plot: no visible binding for global variable ‘y’ static_plot: no visible binding for global variable ‘group’ Undefined global functions or variables: algorithm amplitude_label duration fixation.filter group kmeans median missing.samples ms offset onset raw.x raw.y sd setNames tail velocity x x.raw y y.raw Consider adding importFrom("stats", "kmeans", "median", "offset", "sd", "setNames") importFrom("utils", "tail") to your NAMESPACE file. * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... NOTE Rd file 'animated_fixation_plot.Rd': \examples lines wider than 100 characters: new.plot <- animated_fixation_plot(sample.data.fixations, plot.onset = 2000, plot.offset = 3000, background.images = background.images) new.plot <- animated_fixation_plot(sample.data.fixations, plot.onset = 2000, plot.offset = 3000, background.images = NA) These lines will be truncated in the PDF manual. * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented code objects: ‘sample.data.filtered’ ‘sample.data.fixation1’ ‘sample.data.fixations’ ‘sample.data.processed’ ‘sample.data.raw’ ‘sample.data.saccades’ ‘sample.data.unprocessed’ Undocumented data sets: ‘sample.data.filtered’ ‘sample.data.fixation1’ ‘sample.data.fixations’ ‘sample.data.processed’ ‘sample.data.raw’ ‘sample.data.saccades’ ‘sample.data.unprocessed’ All user-level objects in a package should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Undocumented arguments in Rd file 'animated_fixation_plot.Rd' ‘show.progress’ Undocumented arguments in Rd file 'cluster2m.Rd' ‘min.fixation.duration’ Undocumented arguments in Rd file 'draw_aois.Rd' ‘image.path’ Undocumented arguments in Rd file 'find.transition.weights.Rd' ‘data_in’ ‘window.step.size’ ‘windowsize’ Undocumented arguments in Rd file 'ivt_filter.Rd' ‘save.velocity.profiles’ ‘merge.ms.threshold’ Documented arguments not in \usage in Rd file 'ivt_filter.Rd': ‘save_velocity_profiles’ Undocumented arguments in Rd file 'static_plot.Rd' ‘gazedata’ ‘gazepoint.size’ ‘id_color_map’ Documented arguments not in \usage in Rd file 'static_plot.Rd': ‘gaze_data’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... ERROR Warning: parse error in file 'lines': 1: unexpected symbol 27: offset = c(4000, 6000) 28: new.plot ^ ** will not attempt to run examples * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress sample.data.filtered.RData 154Kb 105Kb xz sample.data.processed.RData 543Kb 368Kb xz sample.data.raw.RData 484Kb 274Kb xz sample.data.unprocessed.RData 205Kb 132Kb xz * checking examples ... SKIPPED * checking PDF version of manual ... [3s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 6 WARNINGs, 4 NOTEs