downloading reverse dependencies ... downloading kml3d_2.4.6.1.tar.gz ... ok downloading latrend_1.6.1.tar.gz ... ok installing dependencies ‘clusterCrit’, ‘crimCV’, ‘funFEM’, ‘kml’, ‘lcmm’, ‘mclustcomp’, ‘mixAK’, ‘simTool’ begin installing package ‘kml’ begin installing package ‘funFEM’ begin installing package ‘lcmm’ begin installing package ‘mixAK’ begin installing package ‘crimCV’ begin installing package ‘mclustcomp’ begin installing package ‘simTool’ begin installing package ‘clusterCrit’ * installing *source* package ‘simTool’ ... ** package ‘simTool’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (simTool) * installing *source* package ‘clusterCrit’ ... ** package ‘clusterCrit’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-14 accepts -g... yes checking for gcc-14 option to accept ISO C89... none needed checking whether we are using the GNU Fortran compiler... yes checking whether gfortran-14 accepts -g... yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpkITfdn/R.INSTALL1a31c069204c39/clusterCrit/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c criteria.c -o criteria.o criteria.c: In function ‘cluc_errorMsg’: criteria.c:331:17: warning: unused variable ‘msg’ [-Wunused-variable] 331 | char msg[128]; | ^~~ gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c norms.f95 -o norms.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c matrix.f95 -o matrix.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c critUtils.f95 -o critUtils.o critUtils.f95:847:26: 847 | sConc(1) = sConc(1) + ip - 1 | 1 Warning: Possible change of value in conversion from INTEGER(4) to INTEGER(1) at (1) [-Wconversion] critUtils.f95:851:29: 851 | sConc(2) = sConc(2) + (sPNum(1) - iw + 1) | 1 Warning: Possible change of value in conversion from INTEGER(4) to INTEGER(1) at (1) [-Wconversion] critUtils.f95:855:29: 855 | sConc(1) = sConc(1) + 1 | 1 Warning: Possible change of value in conversion from INTEGER(4) to INTEGER(1) at (1) [-Wconversion] gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c indices.f95 -o indices.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c critCalc.f95 -o critCalc.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o clusterCrit.so criteria.o norms.o matrix.o critUtils.o indices.o critCalc.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpkITfdn/R.INSTALL1a31c069204c39/clusterCrit/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-clusterCrit/00new/clusterCrit/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (clusterCrit) * installing *source* package ‘funFEM’ ... ** package ‘funFEM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (funFEM) * installing *source* package ‘kml’ ... ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpqrbdp0/R.INSTALL1a31b4484aef49/kml/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kml.c -o kml.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kml_init.c -o kml_init.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o kml.so kml.o kml_init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpqrbdp0/R.INSTALL1a31b4484aef49/kml/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-kml/00new/kml/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading #################################################################### ######################### Class ClustLongData ###################### ############################## Creation ############################ #################################################################### ### Definition ### ### Getteur ### ### Setteur ### #################################################################### ######################### Class ClustLongData ###################### ############################### Autres ############################# #################################################################### -------------------------------------------------------------------- ------------------------- Class ClustLongData ---------------------- --------------------------------- Fin ------------------------------ -------------------------------------------------------------------- ### Method : 'show' for ParKml ### #################################################################### ########################## Class parChoice ######################### ############################# Creation ############################# #################################################################### ### Constructor ### ### Show ### ### Getteur ### ### Setteur ### -------------------------------------------------------------------- ------------------------ Fin Test ParChoice ------------------------ -------------------------------------------------------------------- #################################################################### ################################ kml ############################### ############################# Creation ############################# #################################################################### ### Method: 'choice' pour clusterizLongData ### ------------------------------------------------------------------- ------------------------------- kml ------------------------------- ------------------------------- Fin ------------------------------- ------------------------------------------------------------------- ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kml) * installing *source* package ‘crimCV’ ... ** package ‘crimCV’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2gpfKT/R.INSTALL1a31b62f9edfaf/crimCV/src' gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c crimCV.f90 -o crimCV.o crimCV.f90:554:9: 554 | lwrk=w(1) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] crimCV.f90:405:9: 405 | lwrk=w(1) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] crimCV.f90:374:9: 374 | lwrk=w(1) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] crimCV.f90:1066:2: 1066 | function sddev(np,x) result(out) | ^ Warning: ‘sddev’ defined but not used [-Wunused-function] crimCV.f90:1495:11: 1495 | if (ierr /= 0) then | ^ Warning: ‘*ierr_32(D)’ may be used uninitialized [-Wmaybe-uninitialized] crimCV.f90:2182:11: 2182 | if (ierr /= 0) then | ^ Warning: ‘*ierr_32(D)’ may be used uninitialized [-Wmaybe-uninitialized] gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c packagename_init.c -o packagename_init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wrap.c -o wrap.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o crimCV.so crimCV.o packagename_init.o wrap.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2gpfKT/R.INSTALL1a31b62f9edfaf/crimCV/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-crimCV/00new/crimCV/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crimCV) * installing *source* package ‘mclustcomp’ ... ** package ‘mclustcomp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpag0uS8/R.INSTALL1a31b8210516ed/mclustcomp/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c auxiliary.cpp -o auxiliary.o auxiliary.cpp: In function ‘Rcpp::List getprobs(Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::NumericVector, int, double)’: auxiliary.cpp:124:10: warning: unused variable ‘maxthr’ [-Wunused-variable] 124 | double maxthr = max(altthr); | ^~~~~~ auxiliary.cpp:125:7: warning: unused variable ‘warningint’ [-Wunused-variable] 125 | int warningint = 0; // 1<-Px, 2<-Py, 3<-Pxy | ^~~~~~~~~~ g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o mclustcomp.so RcppExports.o auxiliary.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpag0uS8/R.INSTALL1a31b8210516ed/mclustcomp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mclustcomp/00new/mclustcomp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mclustcomp) * installing *source* package ‘mixAK’ ... ** package ‘mixAK’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPnoFht/R.INSTALL1a31ba3bb29a14/mixAK/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c 00mixAK_init.cpp -o 00mixAK_init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c AK_BLAS.cpp -o AK_BLAS.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c AK_BSTAT.cpp -o AK_BSTAT.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c AK_LAPACK.cpp -o AK_LAPACK.o AK_LAPACK.cpp: In function ‘void AK_LAPACK::MPpinvSP(double*, double*, int*, const int*)’: AK_LAPACK.cpp:1002:17: warning: variable ‘LTp’ set but not used [-Wunused-but-set-variable] 1002 | static int i, LTp, p_p; | ^~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c AK_Utils.cpp -o AK_Utils.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_Dirichlet.cpp -o Dist_Dirichlet.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_Discrete.cpp -o Dist_Discrete.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_MVN.cpp -o Dist_MVN.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_MVT.cpp -o Dist_MVT.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_TMVN.cpp -o Dist_TMVN.o Dist_TMVN.cpp: In function ‘void Dist::rTMVN2(double*, double*, const double*, const double*, const int*, const double*, const double*, const int*, const int*)’: Dist_TMVN.cpp:84:33: warning: variable ‘aP’ set but not used [-Wunused-but-set-variable] 84 | static const double *alphaP, *aP, *bP, *GzP; | ^~ Dist_TMVN.cpp:84:38: warning: variable ‘bP’ set but not used [-Wunused-but-set-variable] 84 | static const double *alphaP, *aP, *bP, *GzP; | ^~ Dist_TMVN.cpp:84:43: warning: variable ‘GzP’ set but not used [-Wunused-but-set-variable] 84 | static const double *alphaP, *aP, *bP, *GzP; | ^~~ Dist_TMVN.cpp:85:21: warning: variable ‘truncP’ set but not used [-Wunused-but-set-variable] 85 | static const int *truncP; | ^~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_TNorm.cpp -o Dist_TNorm.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_TmixMVN.cpp -o Dist_TmixMVN.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_TmixNorm.cpp -o Dist_TmixNorm.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_Wishart.cpp -o Dist_Wishart.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_mixMVN.cpp -o Dist_mixMVN.o Dist_mixMVN.cpp: In function ‘void Dist::dmixMVN_R(double*, double*, double*, double*, int*, const double*, const int*, const double*, const int*, const int*)’: Dist_mixMVN.cpp:213:13: warning: unused variable ‘LTnx’ [-Wunused-variable] 213 | const int LTnx = (*nx * (*nx + 1))/2; | ^~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dist_mixNorm.cpp -o Dist_mixNorm.o Dist_mixNorm.cpp: In function ‘void Dist::dmixNorm_R(double*, const double*, const int*, const double*, const double*, const double*, const int*)’: Dist_mixNorm.cpp:91:7: warning: unused variable ‘k’ [-Wunused-variable] 91 | int k, j; | ^ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_Deviance.cpp -o GLMM_Deviance.o GLMM_Deviance.cpp: In function ‘void GLMM::Deviance(double*, double*, double*, double*, double*, double*, double*, double**, int**, double**, double**, double**, double**, double**, int**, int*, double*, int*, double**, int**, double**, double**, double**, double**, double**, int**, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*)’: GLMM_Deviance.cpp:140:10: warning: unused variable ‘U2_g’ [-Wunused-variable] 140 | double U2_g[5]; | ^~~~ GLMM_Deviance.cpp:141:10: warning: unused variable ‘H2_g’ [-Wunused-variable] 141 | double H2_g[15]; | ^~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_Deviance2.cpp -o GLMM_Deviance2.o GLMM_Deviance2.cpp: In function ‘void GLMM::Deviance2(double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, double*, double*, double**, int**, double**, double**, double**, double**, double**, int**, int*, double*, int*, double**, int**, double**, double**, double**, double**, double**, int**, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*)’: GLMM_Deviance2.cpp:104:28: warning: unused variable ‘bDb’ [-Wunused-variable] 104 | static double log_det_R, bDb, loglik_ik, max_log_pi_ik; | ^~~ GLMM_Deviance2.cpp:130:18: warning: unused variable ‘bscaled_hatP’ [-Wunused-variable] 130 | static double *bscaled_hatP; | ^~~~~~~~~~~~ GLMM_Deviance2.cpp:160:10: warning: unused variable ‘U2_g’ [-Wunused-variable] 160 | double U2_g[5]; | ^~~~ GLMM_Deviance2.cpp:161:10: warning: unused variable ‘H2_g’ [-Wunused-variable] 161 | double H2_g[15]; | ^~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_Deviance2Pr_obs.cpp -o GLMM_Deviance2Pr_obs.o GLMM_Deviance2Pr_obs.cpp: In function ‘void GLMM::Deviance2Pr_obs(double*, const double*, const double*, const double*, const int*, const int*)’: GLMM_Deviance2Pr_obs.cpp:34:17: warning: unused variable ‘sum_w_L_ik’ [-Wunused-variable] 34 | static double sum_w_L_ik; | ^~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_MCMC.cpp -o GLMM_MCMC.o GLMM_MCMC.cpp: In function ‘void GLMM_MCMC(double*, int*, const int*, int*, const double*, double*, const int*, const double*, const double*, const int*, const double*, const double*, const double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*, double*, double*, double*, double*, double*, double*, int*, int*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, int*)’: GLMM_MCMC.cpp:96:13: warning: unused variable ‘DEBUG’ [-Wunused-variable] 96 | const int DEBUG = 0; | ^~~~~ GLMM_MCMC.cpp:253:17: warning: unused variable ‘h_df’ [-Wunused-variable] 253 | const double *h_df = g_df + 1; | ^~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_NMixRelabel.cpp -o GLMM_NMixRelabel.o GLMM_NMixRelabel.cpp:346:1: warning: "/*" within comment [-Wcomment] 346 | /***** %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% *****/ GLMM_NMixRelabel.cpp: In function ‘void GLMM_NMixRelabel(const int*, const int*, const int*, double*, int*, const int*, const int*, const int*, int*, const double*, double*, const int*, const double*, const int*, const int*, const double*, const double*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, int*, int*, double*, int*, int*, double*, double*, double*, double*, double*, int*, double*, double*, double*, double*, int*, int*, int*)’: GLMM_NMixRelabel.cpp:543:5: warning: ‘simpleType’ may be used uninitialized [-Wmaybe-uninitialized] 543 | switch (simpleType){ | ^~~~~~ GLMM_NMixRelabel.cpp:392:7: note: ‘simpleType’ was declared here 392 | int simpleType; | ^~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_PED.cpp -o GLMM_PED.o GLMM_PED.cpp: In function ‘void GLMM_PED(double*, double*, double*, double*, int*, int*, int*, double*, double*, double*, double*, double*, double*, double*, int*, double*, int*, const int*, int*, const double*, double*, const int*, const int*, const double*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const double*, const double*)’: GLMM_PED.cpp:123:7: warning: unused variable ‘LT_max_p_fi’ [-Wunused-variable] 123 | int LT_max_p_fi = (max_p_fi * (max_p_fi + 1)) / 2; | ^~~~~~~~~~~ GLMM_PED.cpp:355:7: warning: unused variable ‘max_N_s’ [-Wunused-variable] 355 | int max_N_s = AK_Basic::maxArray(N_s, R); | ^~~~~~~ GLMM_PED.cpp:512:12: warning: unused variable ‘eta_zsrespP’ [-Wunused-variable] 512 | double **eta_zsrespP = R_Calloc(R, double*); | ^~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_copy_shift_eta_meanY_Zresp.cpp -o GLMM_copy_shift_eta_meanY_Zresp.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_create_SZitZiS.cpp -o GLMM_create_SZitZiS.o GLMM_create_SZitZiS.cpp: In function ‘void GLMM::create_SZitZiS(double*, double**, double**, const double*, const int*, const int*, const int*, const int*, const int*, const int*)’: GLMM_create_SZitZiS.cpp:129:21: warning: ‘SZitZiS_is’ may be used uninitialized [-Wmaybe-uninitialized] 129 | SZitZiS_is++; | ~~~~~~~~~~^~ GLMM_create_SZitZiS.cpp:34:11: note: ‘SZitZiS_is’ was declared here 34 | double *SZitZiS_is, *SZitZiSP; | ^~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_create_SZitZiS_4longitDA.cpp -o GLMM_create_SZitZiS_4longitDA.o GLMM_create_SZitZiS_4longitDA.cpp: In function ‘void GLMM::create_SZitZiS_4longitDA(double*, double*, double**, double**, const double*, const int*, const int*, const int*, const int*, const int*, const int*)’: GLMM_create_SZitZiS_4longitDA.cpp:34:41: warning: unused variable ‘SZitZiSP’ [-Wunused-variable] 34 | double *SZitZiS_c_is, *SZitZiS_d_is, *SZitZiSP, *SZitZiS_prev; | ^~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_create_XtX.cpp -o GLMM_create_XtX.o GLMM_create_XtX.cpp: In function ‘void GLMM::create_XtX(double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*)’: GLMM_create_XtX.cpp:109:16: warning: ‘XtX_s’ may be used uninitialized [-Wmaybe-uninitialized] 109 | XtX_s++; | ~~~~~^~ GLMM_create_XtX.cpp:31:11: note: ‘XtX_s’ was declared here 31 | double *XtX_s, *XtXP; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_create_ZS.cpp -o GLMM_create_ZS.o GLMM_create_ZS.cpp: In function ‘void GLMM::create_ZS(double*, double**, int**, double**, int**, const double*, const int*, const int*, const int*, const int*)’: GLMM_create_ZS.cpp:33:26: warning: unused variable ‘scaleP2’ [-Wunused-variable] 33 | const double *scaleP, *scaleP2; | ^~~~~~~ GLMM_create_ZS.cpp:42:7: warning: unused variable ‘iZS’ [-Wunused-variable] 42 | int iZS = 0; | ^~~ GLMM_create_ZS.cpp:96:31: warning: ‘ZP’ may be used uninitialized [-Wmaybe-uninitialized] 96 | if (*qP) ZrespP[s] = ZP - (*qP - 1); | ~~~^~~~~~~~~~~ GLMM_create_ZS.cpp:31:26: note: ‘ZP’ was declared here 31 | double *ZSP, *Zstart, *ZP; | ^~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_create_ZiS.cpp -o GLMM_create_ZiS.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_dY_meanY.cpp -o GLMM_dY_meanY.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_eta_fixed_random2eta_meanY.cpp -o GLMM_eta_fixed_random2eta_meanY.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_fitted_Bernoulli_Logit.cpp -o GLMM_fitted_Bernoulli_Logit.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_fitted_Poisson_Log.cpp -o GLMM_fitted_Poisson_Log.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_linear_predictors.cpp -o GLMM_linear_predictors.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_longitDA.cpp -o GLMM_longitDA.o GLMM_longitDA.cpp: In function ‘void GLMM_longitDA(double*, const int*, int*, const int*, const int*, const int*, const int*, const int*, const double*, const int*, const int*, double*, const int*, const int*, const double*, const int*, const int*, const int*, const double*, const int*, const double*, const double*, const double*, const double*, double*, double*, double*, int*)’: GLMM_longitDA.cpp:63:13: warning: unused variable ‘DEBUG’ [-Wunused-variable] 63 | const int DEBUG = 0; | ^~~~~ GLMM_longitDA.cpp:66:14: warning: unused variable ‘m’ [-Wunused-variable] 66 | int s, cl, m, i, j, k; | ^ GLMM_longitDA.cpp:66:20: warning: unused variable ‘j’ [-Wunused-variable] 66 | int s, cl, m, i, j, k; | ^ GLMM_longitDA.cpp:70:13: warning: unused variable ‘R_I’ [-Wunused-variable] 70 | const int R_I = R * *I; | ^~~ GLMM_longitDA.cpp:162:7: warning: unused variable ‘backs’ [-Wunused-variable] 162 | int backs = 1; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_longitDA2.cpp -o GLMM_longitDA2.o GLMM_longitDA2.cpp: In function ‘void GLMM_longitDA2(const int*, double*, const int*, int*, const int*, const int*, const int*, const int*, int*, const double*, const int*, const int*, double*, const int*, const int*, const double*, const int*, const int*, const int*, const int*, const int*, const double*, const int*, const double*, const double*, const double*, const double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, int*)’: GLMM_longitDA2.cpp:435:22: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 435 | if (*nonSilent && !(iter_lC % *info) || iter_lC == *keepMCMC_cl){ | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ GLMM_longitDA2.cpp:85:14: warning: unused variable ‘m’ [-Wunused-variable] 85 | int s, cl, m, i, j, k; | ^ GLMM_longitDA2.cpp:290:7: warning: unused variable ‘backs’ [-Wunused-variable] 290 | int backs = 1; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_longitPred_nmix_gauss.cpp -o GLMM_longitPred_nmix_gauss.o GLMM_longitPred_nmix_gauss.cpp: In function ‘void GLMM::longitPred_nmix_gauss(double*, double*, double*, double**, double*, double*, double*, int*, double**, int**, double**, double**, double**, int*, double**, int**, double**, const double*, double**, const double*, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const int*, const double*, const double*, const double*)’: GLMM_longitPred_nmix_gauss.cpp:82:31: warning: unused variable ‘eta_randomP’ [-Wunused-variable] 82 | static double *eta_fixedP, *eta_randomP, *eta_zsP; | ^~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_newData.cpp -o GLMM_newData.o GLMM_newData.cpp: In function ‘void GLMM::newData(double*, int*, double*, double*, double*, double*, double*, double*, double*, const double*, const double*, const int*, const int*, const int*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*)’: GLMM_newData.cpp:47:15: warning: unused variable ‘fname’ [-Wunused-variable] 47 | const char *fname = "GLMM::newData"; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_scale_ZitZi.cpp -o GLMM_scale_ZitZi.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_updateFixEf.cpp -o GLMM_updateFixEf.o GLMM_updateFixEf.cpp: In function ‘void GLMM::updateFixEf(double*, double*, double*, double*, double*, double*, int*, int*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*)’: GLMM_updateFixEf.cpp:72:40: warning: unused variable ‘dworkP’ [-Wunused-variable] 72 | static double *mu_fullP, *Li_fullP, *dworkP, *beta_propP; | ^~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_updateHyperVars_eps.cpp -o GLMM_updateHyperVars_eps.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_updateRanEf.cpp -o GLMM_updateRanEf.o GLMM_updateRanEf.cpp:498:5: warning: "/*" within comment [-Wcomment] 498 | /*** +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ***/ GLMM_updateRanEf.cpp: In function ‘void GLMM::updateRanEf(double*, double*, double**, double**, double**, double*, double*, double**, int**, double**, double**, double**, double**, double**, double**, double**, int**, int*, int*, double**, int**, double**, double**, double**, double**, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, int**, const int*, const double*, const int*, const double*, const double*, const double*, const double*, const int*, const double*, const double*)’: GLMM_updateRanEf.cpp:76:32: warning: unused variable ‘row’ [-Wunused-variable] 76 | static int s, i, j, k, itmp, row, col; | ^~~ GLMM_updateRanEf.cpp:76:37: warning: unused variable ‘col’ [-Wunused-variable] 76 | static int s, i, j, k, itmp, row, col; | ^~~ GLMM_updateRanEf.cpp:82:88: warning: unused variable ‘Li_full_backupP’ [-Wunused-variable] 82 | static double *bP, *bscaledP, *bscaled_i, *b_i, *eta_random_propP, *mean_Y_d_propP, *Li_full_backupP, *Li_fullP; | ^~~~~~~~~~~~~~~ GLMM_updateRanEf.cpp:82:106: warning: unused variable ‘Li_fullP’ [-Wunused-variable] 82 | static double *bP, *bscaledP, *bscaled_i, *b_i, *eta_random_propP, *mean_Y_d_propP, *Li_full_backupP, *Li_fullP; | ^~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_updateRanEf_QR.cpp -o GLMM_updateRanEf_QR.o GLMM_updateRanEf_QR.cpp: In function ‘void GLMM::updateRanEf_QR(double*, double*, double**, double**, double**, double*, int*, double*, double**, int**, double**, double**, double**, double**, double**, double**, int**, int*, int*, double**, int**, double**, double**, double**, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, const int*, int**, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const int*, const double*, const double*)’: GLMM_updateRanEf_QR.cpp:73:20: warning: unused variable ‘j’ [-Wunused-variable] 73 | static int s, i, j, k, l; | ^ GLMM_updateRanEf_QR.cpp:73:23: warning: unused variable ‘k’ [-Wunused-variable] 73 | static int s, i, j, k, l; | ^ GLMM_updateRanEf_QR.cpp:73:26: warning: unused variable ‘l’ [-Wunused-variable] 73 | static int s, i, j, k, l; | ^ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GLMM_updateVars_eps.cpp -o GLMM_updateVars_eps.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c LogLik_Bernoulli_Logit.cpp -o LogLik_Bernoulli_Logit.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c LogLik_Gauss_Identity.cpp -o LogLik_Gauss_Identity.o LogLik_Gauss_Identity.cpp: In function ‘void LogLik::Gauss_Identity1(double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*)’: LogLik_Gauss_Identity.cpp:32:48: warning: unused variable ‘log_y_factorP’ [-Wunused-variable] 32 | static const double *offsetP, *xP, *thetaP, *log_y_factorP; | ^~~~~~~~~~~~~ LogLik_Gauss_Identity.cpp: In function ‘void LogLik::Gauss_Identity_sqrt_w_phi1(double*, double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*)’: LogLik_Gauss_Identity.cpp:106:48: warning: unused variable ‘log_y_factorP’ [-Wunused-variable] 106 | static const double *offsetP, *xP, *thetaP, *log_y_factorP; | ^~~~~~~~~~~~~ LogLik_Gauss_Identity.cpp: In function ‘void LogLik::Gauss_Identity_sqrt_w_phi_stres1(double*, double*, double*, double*, double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*)’: LogLik_Gauss_Identity.cpp:188:48: warning: unused variable ‘log_y_factorP’ [-Wunused-variable] 188 | static const double *offsetP, *xP, *thetaP, *log_y_factorP; | ^~~~~~~~~~~~~ LogLik_Gauss_Identity.cpp: In function ‘void LogLik::Gauss_Identity3(double*, double*, const double*, const double*, const double*, const double*, const double*, const int*, const int*, const int*)’: LogLik_Gauss_Identity.cpp:460:20: warning: unused variable ‘k’ [-Wunused-variable] 460 | static int i, j, k; | ^ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c LogLik_Poisson_Log.cpp -o LogLik_Poisson_Log.o LogLik_Poisson_Log.cpp: In function ‘void LogLik::Poisson_Log_sqrt_w_phi_stres2(double*, double*, double*, const double*, const double*, const double*, const double*, const int*, const double*, const int*)’: LogLik_Poisson_Log.cpp:295:17: warning: unused variable ‘eta_now’ [-Wunused-variable] 295 | static double eta_now, ll_now; | ^~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MCMC_Moments_NormalApprox.cpp -o MCMC_Moments_NormalApprox.o MCMC_Moments_NormalApprox.cpp: In function ‘void MCMC::Moments_NormalApprox(double*, double*, const double*, const double*, const double*, const int*)’: MCMC_Moments_NormalApprox.cpp:96:27: warning: unused variable ‘QP’ [-Wunused-variable] 96 | static double *cmeanP, *QP; | ^~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MCMC_Moments_NormalApprox_QR.cpp -o MCMC_Moments_NormalApprox_QR.o MCMC_Moments_NormalApprox_QR.cpp: In function ‘void MCMC::Moments_NormalApprox_QR(double*, double*, int*, int*, double*, double*, int*, const double*, const double*, const int*, const int*, const char*)’: MCMC_Moments_NormalApprox_QR.cpp:180:14: warning: unused variable ‘one’ [-Wunused-variable] 180 | static int one = 1; | ^~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MCMC_loglik_Zwork1_stres.cpp -o MCMC_loglik_Zwork1_stres.o MCMC_loglik_Zwork1_stres.cpp: In function ‘void MCMC::loglik(double*, double*, int*, double**, double**, double**, int**, int**, double**, const double*, const double*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*)’: MCMC_loglik_Zwork1_stres.cpp:476:17: warning: unused variable ‘s2’ [-Wunused-variable] 476 | static int s, s2, l; | ^~ MCMC_loglik_Zwork1_stres.cpp: In function ‘void MCMC::loglik(double*, int*, double**, double**, double**, int**, int**, double**, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*)’: MCMC_loglik_Zwork1_stres.cpp:577:17: warning: unused variable ‘s2’ [-Wunused-variable] 577 | static int s, s2, l; | ^~ MCMC_loglik_Zwork1_stres.cpp:577:21: warning: unused variable ‘l’ [-Wunused-variable] 577 | static int s, s2, l; | ^ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Misc_findIndexOfPermutation.cpp -o Misc_findIndexOfPermutation.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Misc_generatePermutations.cpp -o Misc_generatePermutations.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_ChainsDerived.cpp -o NMix_ChainsDerived.o NMix_ChainsDerived.cpp: In function ‘void NMix_ChainsDerived(double*, double*, int*, const int*, const double*, const int*, const double*, const double*, const double*, const int*, const int*)’: NMix_ChainsDerived.cpp:37:11: warning: unused variable ‘dP’ [-Wunused-variable] 37 | double *dP; | ^~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_Deviance.cpp -o NMix_Deviance.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_MCMC.cpp -o NMix_MCMC.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_NMixRelabel.cpp -o NMix_NMixRelabel.o NMix_NMixRelabel.cpp: In function ‘void NMix_NMixRelabel(const int*, const int*, const double*, const double*, const int*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, int*, int*, double*, int*, double*, double*, double*, double*, double*, int*, double*, double*, int*, int*, int*)’: NMix_NMixRelabel.cpp:212:11: warning: unused variable ‘hatPr_yP’ [-Wunused-variable] 212 | double *hatPr_yP = NULL; | ^~~~~~~~ NMix_NMixRelabel.cpp:329:5: warning: ‘simpleType’ may be used uninitialized [-Wmaybe-uninitialized] 329 | switch (simpleType){ | ^~~~~~ NMix_NMixRelabel.cpp:207:7: note: ‘simpleType’ was declared here 207 | int simpleType; | ^~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PED.cpp -o NMix_PED.o NMix_PED.cpp: In function ‘void NMix_PED(double*, double*, double*, double*, int*, int*, int*, double*, int*, const double*, const double*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const int*, const double*, const double*, const double*, const int*, const int*, const int*, const double*, const double*)’: NMix_PED.cpp:56:15: warning: unused variable ‘fname’ [-Wunused-variable] 56 | const char *fname = "NMix_PED"; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PED_coreMulti.cpp -o NMix_PED_coreMulti.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PED_coreUni.cpp -o NMix_PED_coreUni.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PosterMeanMixParam.cpp -o NMix_PosterMeanMixParam.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_Pr_y_and_cum_Pr_y.cpp -o NMix_Pr_y_and_cum_Pr_y.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PredCDFMarg.cpp -o NMix_PredCDFMarg.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PredCondDensCDFMarg.cpp -o NMix_PredCondDensCDFMarg.o NMix_PredCondDensCDFMarg.cpp: In function ‘void NMix_PredCondDensCDFMarg(double*, double*, int*, const int*, const int*, const double*, const int*, const double*, const int*, const int*, const int*, const double*, const double*, const double*, const int*)’: NMix_PredCondDensCDFMarg.cpp:70:17: warning: unused variable ‘wP’ [-Wunused-variable] 70 | const double *wP = NULL; | ^~ NMix_PredCondDensCDFMarg.cpp:71:17: warning: unused variable ‘muP’ [-Wunused-variable] 71 | const double *muP = NULL; | ^~~ NMix_PredCondDensCDFMarg.cpp:72:17: warning: unused variable ‘LiP’ [-Wunused-variable] 72 | const double *LiP = NULL; | ^~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PredCondDensJoint2.cpp -o NMix_PredCondDensJoint2.o NMix_PredCondDensJoint2.cpp: In function ‘void NMix_PredCondDensJoint2(double*, double*, int*, const int*, const double*, const int*, const int*, const int*, const double*, const double*, const double*, const int*)’: NMix_PredCondDensJoint2.cpp:56:17: warning: unused variable ‘wP’ [-Wunused-variable] 56 | const double *wP = NULL; | ^~ NMix_PredCondDensJoint2.cpp:57:17: warning: unused variable ‘muP’ [-Wunused-variable] 57 | const double *muP = NULL; | ^~~ NMix_PredCondDensJoint2.cpp:58:17: warning: unused variable ‘LiP’ [-Wunused-variable] 58 | const double *LiP = NULL; | ^~~ NMix_PredCondDensJoint2.cpp:105:29: warning: ‘lcgrid’ may be used uninitialized [-Wmaybe-uninitialized] 105 | dens_numer = dens_denom + lcgrid; /** space to store numerator when computing conditional densities **/ | ^~~~~~ NMix_PredCondDensJoint2.cpp:72:7: note: ‘lcgrid’ was declared here 72 | int lcgrid; | ^~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PredDA.cpp -o NMix_PredDA.o NMix_PredDA.cpp: In function ‘void NMix_PredDA(const double*, const double*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const int*, double*, int*, int*, double*, int*)’: NMix_PredDA.cpp:39:13: warning: unused variable ‘debug’ [-Wunused-variable] 39 | const int debug = 0; | ^~~~~ NMix_PredDA.cpp:40:15: warning: unused variable ‘fname’ [-Wunused-variable] 40 | const char *fname = "NMix_PredDA"; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PredDensJoint2.cpp -o NMix_PredDensJoint2.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_PredDensMarg.cpp -o NMix_PredDensMarg.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_RJMCMC_aux_vector_u.cpp -o NMix_RJMCMC_aux_vector_u.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_RJMCMC_logJacLambdaVSigma.cpp -o NMix_RJMCMC_logJacLambdaVSigma.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_RJMCMC_logJac_part3.cpp -o NMix_RJMCMC_logJac_part3.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_RJMCMCbirth.cpp -o NMix_RJMCMCbirth.o NMix_RJMCMCbirth.cpp: In function ‘void NMix::RJMCMCbirth(int*, double*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, double*, int*, const int*, const int*, const int*, const double*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*)’: NMix_RJMCMCbirth.cpp:54:39: warning: variable ‘dwork_orderComp’ set but not used [-Wunused-but-set-variable] 54 | static double *dwork_misc, *Li4mu, *dwork_orderComp; | ^~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_RJMCMCcombine.cpp -o NMix_RJMCMCcombine.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_RJMCMCdeath.cpp -o NMix_RJMCMCdeath.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_RJMCMCsplit.cpp -o NMix_RJMCMCsplit.o NMix_RJMCMCsplit.cpp: In function ‘void NMix::RJMCMCsplit(int*, double*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*, int*, int*, int**, double*, double*, double*, double*, int*, int*, const double*, const int*, const int*, const int*, const double*, const double*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const double*, const int*, const double*, void (*)(double*, double*, const double*, const int*))’: NMix_RJMCMCsplit.cpp:68:18: warning: variable ‘dlambdaV_dSigma’ set but not used [-Wunused-but-set-variable] 68 | static double *dlambdaV_dSigma; | ^~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_Stephens_costMatrix.cpp -o NMix_Stephens_costMatrix.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_Stephens_step1.cpp -o NMix_Stephens_step1.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_Stephens_step2_search.cpp -o NMix_Stephens_step2_search.o NMix_Stephens_step2_search.cpp: In function ‘void NMix::Stephens_step2_search(int*, int*, int*, int*, const double*, const double*, const int*, const int*, const int*, const int*, const int*)’: NMix_Stephens_step2_search.cpp:37:37: warning: unused variable ‘pij_q’ [-Wunused-variable] 37 | static double minLoss, Loss, pij, pij_q; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_Stephens_step2_transport.cpp -o NMix_Stephens_step2_transport.o NMix_Stephens_step2_transport.cpp: In function ‘void NMix::Stephens_step2_transport(int*, int*, int*, double*, double*, int*, double*, int*, double*, int*, const double*, const double*, const int*, const int*, const int*)’: NMix_Stephens_step2_transport.cpp:37:15: warning: variable ‘orderP’ set but not used [-Wunused-but-set-variable] 37 | static int *orderP, *rankP; | ^~~~~~ NMix_Stephens_step2_transport.cpp:37:24: warning: variable ‘rankP’ set but not used [-Wunused-but-set-variable] 37 | static int *orderP, *rankP; | ^~~~~ NMix_Stephens_step2_transport.cpp:39:17: warning: unused variable ‘minLoss’ [-Wunused-variable] 39 | static double minLoss[1]; | ^~~~~~~ NMix_Stephens_step2_transport.cpp:40:14: warning: unused variable ‘lp_status’ [-Wunused-variable] 40 | static int lp_status[1]; | ^~~~~~~~~ NMix_Stephens_step2_transport.cpp:42:17: warning: unused variable ‘IZERO’ [-Wunused-variable] 42 | static int IZERO[1] = {0}; | ^~~~~ NMix_Stephens_step2_transport.cpp:43:17: warning: unused variable ‘DZERO’ [-Wunused-variable] 43 | static double DZERO[1] = {0}; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_Utils.cpp -o NMix_Utils.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_fullCondMean_WeightsMeansVars.cpp -o NMix_fullCondMean_WeightsMeansVars.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_orderComp.cpp -o NMix_orderComp.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_reorder_Pr_y.cpp -o NMix_reorder_Pr_y.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_sum_Ir.cpp -o NMix_sum_Ir.o NMix_sum_Ir.cpp: In function ‘void NMix::sum_Ir(int*, const int*, const int*, const int*, const int*, const int*)’: NMix_sum_Ir.cpp:26:17: warning: unused variable ‘j’ [-Wunused-variable] 26 | static int l, j, m; | ^ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_updateAlloc.cpp -o NMix_updateAlloc.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_updateCensObs.cpp -o NMix_updateCensObs.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_updateHyperVars.cpp -o NMix_updateHyperVars.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_updateMeansVars.cpp -o NMix_updateMeansVars.o NMix_updateMeansVars.cpp: In function ‘void NMix::updateMeansVars_IC_homoscedastic(double*, double*, double*, double*, double*, int*, int*, double*, int*, const double*, const int*, const int*, const int*, const int*, const int*, const double*, const double*, const double*, const double*, const double*, const double*, const double*)’: NMix_updateMeansVars.cpp:477:38: warning: unused variable ‘log_detsP’ [-Wunused-variable] 477 | static double *QP, *SigmaP, *LiP, *log_detsP, *muP, *mixSSmP, *dP; | ^~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_updateWeights.cpp -o NMix_updateWeights.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix_update_sum_Ir_and_sum_Pr_y.cpp -o NMix_update_sum_Ir_and_sum_Pr_y.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Rand_RotationMatrix.cpp -o Rand_RotationMatrix.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Rand_SamplePair.cpp -o Rand_SamplePair.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Stat_BLA.cpp -o Stat_BLA.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Stat_Quantile.cpp -o Stat_Quantile.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o mixAK.so 00mixAK_init.o AK_BLAS.o AK_BSTAT.o AK_LAPACK.o AK_Utils.o Dist_Dirichlet.o Dist_Discrete.o Dist_MVN.o Dist_MVT.o Dist_TMVN.o Dist_TNorm.o Dist_TmixMVN.o Dist_TmixNorm.o Dist_Wishart.o Dist_mixMVN.o Dist_mixNorm.o GLMM_Deviance.o GLMM_Deviance2.o GLMM_Deviance2Pr_obs.o GLMM_MCMC.o GLMM_NMixRelabel.o GLMM_PED.o GLMM_copy_shift_eta_meanY_Zresp.o GLMM_create_SZitZiS.o GLMM_create_SZitZiS_4longitDA.o GLMM_create_XtX.o GLMM_create_ZS.o GLMM_create_ZiS.o GLMM_dY_meanY.o GLMM_eta_fixed_random2eta_meanY.o GLMM_fitted_Bernoulli_Logit.o GLMM_fitted_Poisson_Log.o GLMM_linear_predictors.o GLMM_longitDA.o GLMM_longitDA2.o GLMM_longitPred_nmix_gauss.o GLMM_newData.o GLMM_scale_ZitZi.o GLMM_updateFixEf.o GLMM_updateHyperVars_eps.o GLMM_updateRanEf.o GLMM_updateRanEf_QR.o GLMM_updateVars_eps.o LogLik_Bernoulli_Logit.o LogLik_Gauss_Identity.o LogLik_Poisson_Log.o MCMC_Moments_NormalApprox.o MCMC_Moments_NormalApprox_QR.o MCMC_loglik_Zwork1_stres.o Misc_findIndexOfPermutation.o Misc_generatePermutations.o NMix_ChainsDerived.o NMix_Deviance.o NMix_MCMC.o NMix_NMixRelabel.o NMix_PED.o NMix_PED_coreMulti.o NMix_PED_coreUni.o NMix_PosterMeanMixParam.o NMix_Pr_y_and_cum_Pr_y.o NMix_PredCDFMarg.o NMix_PredCondDensCDFMarg.o NMix_PredCondDensJoint2.o NMix_PredDA.o NMix_PredDensJoint2.o NMix_PredDensMarg.o NMix_RJMCMC_aux_vector_u.o NMix_RJMCMC_logJacLambdaVSigma.o NMix_RJMCMC_logJac_part3.o NMix_RJMCMCbirth.o NMix_RJMCMCcombine.o NMix_RJMCMCdeath.o NMix_RJMCMCsplit.o NMix_Stephens_costMatrix.o NMix_Stephens_step1.o NMix_Stephens_step2_search.o NMix_Stephens_step2_transport.o NMix_Utils.o NMix_fullCondMean_WeightsMeansVars.o NMix_orderComp.o NMix_reorder_Pr_y.o NMix_sum_Ir.o NMix_updateAlloc.o NMix_updateCensObs.o NMix_updateHyperVars.o NMix_updateMeansVars.o NMix_updateWeights.o NMix_update_sum_Ir_and_sum_Pr_y.o Rand_RotationMatrix.o Rand_SamplePair.o Stat_BLA.o Stat_Quantile.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPnoFht/R.INSTALL1a31ba3bb29a14/mixAK/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mixAK/00new/mixAK/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mixAK) * installing *source* package ‘lcmm’ ... ** package ‘lcmm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpqCo290/R.INSTALL1a31bc7e37219/lcmm/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c runiran.c -o runiran.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c compute.f90 -o compute.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c hetmixOrd.f90 -o hetmixOrd.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c hetmixlin.f90 -o hetmixlin.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c hetmixCont.f90 -o hetmixCont.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c Jointhet.f90 -o Jointhet.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c calculusTransfo.f90 -o calculusTransfo.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c predictCont.f90 -o predictCont.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c predictMult.f90 -o predictMult.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c postprob2.f90 -o postprob2.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c cvpl.f90 -o cvpl.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c predictYcond.f90 -o predictYcond.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c mpjhet.f90 -o mpjhet.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c hetmixMult.f90 -o hetmixMult.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c iteminfo.f90 -o iteminfo.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o lcmm.so init.o runiran.o compute.o hetmixOrd.o hetmixlin.o hetmixCont.o Jointhet.o calculusTransfo.o predictCont.o predictMult.o postprob2.o cvpl.o predictYcond.o mpjhet.o hetmixMult.o iteminfo.o -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpqCo290/R.INSTALL1a31bc7e37219/lcmm/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-lcmm/00new/lcmm/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lcmm) checking kml_2.5.0.tar.gz ... checking kml3d_2.4.6.1.tar.gz ... checking latrend_1.6.1.tar.gz ... Depends: Package: kml Depends: methods,clv,longitudinalData (>= 2.4) Timings: user system elapsed kml 37.717 6.506 44.896 Results: Check status summary: NOTE Source packages 1 Reverse depends 2 Check results summary: kml ... NOTE * checking CRAN incoming feasibility ... [4s/5s] NOTE rdepends_kml3d ... NOTE * checking Rd cross-references ... NOTE rdepends_latrend ... NOTE * checking Rd cross-references ... NOTE