R Under development (unstable) (2024-08-26 r87056 ucrt) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(kmeRtone) > > testthat::test_check("kmeRtone") ------------------------------------------------------------ Extraction of Case K-mers ------------------------------------------------------------ % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 18.6M 0 179k 0 0 156k 0 0:02:01 0:00:01 0:02:00 156k 42 18.6M 42 8124k 0 0 3821k 0 0:00:04 0:00:02 0:00:02 3825k 100 18.6M 100 18.6M 0 0 7594k 0 0:00:02 0:00:02 --:--:-- 7604k % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 1 11.0M 1 187k 0 0 163k 0 0:01:09 0:00:01 0:01:08 163k 89 11.0M 89 9.8M 0 0 4717k 0 0:00:02 0:00:02 --:--:-- 4723k 100 11.0M 100 11.0M 0 0 5225k 0 0:00:02 0:00:02 --:--:-- 5231k % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 6 10.8M 6 773k 0 0 510k 0 0:00:21 0:00:01 0:00:20 525k 100 10.8M 100 10.8M 0 0 5021k 0 0:00:02 0:00:02 --:--:-- 5121k Extracting 2-mers from chr20............DONE! -- 5.84 secs Extracting 2-mers from chr21............DONE! -- 4.78 secs Extracting 2-mers from chr22............DONE! -- 4.72 secs Downloading chr20.fa.gz from UCSC... Downloading chr21.fa.gz from UCSC... Downloading chr22.fa.gz from UCSC... Total time taken: 15.74 secs ------------------------------------------------------------ Extraction of Control K-mers ------------------------------------------------------------ Building control regions of chr20.......DONE! -- 2 secs Building control regions of chr21.......DONE! -- 1.58 secs Building control regions of chr22.......DONE! -- 1.43 secs Total time taken: 5.15 secs Extracting 2-mers from chr20............DONE! -- 2.19 secs Extracting 2-mers from chr21............DONE! -- 1.69 secs Extracting 2-mers from chr22............DONE! -- 1.32 secs Total time taken: 5.49 secs ------------------------------------------------------------ Calculation of K-mer Susceptibility ------------------------------------------------------------ The 2-mer scores are saved at D:\temp\Rtmpm8rstk/score_2-mer.csv FINISH! Total time taken: 26.4 secs [ FAIL 0 | WARN 3 | SKIP 0 | PASS 2 ] [ FAIL 0 | WARN 3 | SKIP 0 | PASS 2 ] > > proc.time() user system elapsed 20.06 1.95 31.18