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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(kmeRtone) > > test_check("kmeRtone") ------------------------------------------------------------ Extraction of Case K-mers ------------------------------------------------------------ Extracting 2-mers from chr1.............DONE! -- 6 secs Extracting 2-mers from chr2.............DONE! -- 6.01 secs Extracting 2-mers from chr3.............DONE! -- 4.8 secs Extracting 2-mers from chr4.............DONE! -- 4.72 secs Extracting 2-mers from chr5.............DONE! -- 4.46 secs Extracting 2-mers from chr6.............DONE! -- 4.33 secs Extracting 2-mers from chr7.............DONE! -- 4.03 secs Extracting 2-mers from chr8.............DONE! -- 3.3 secs Extracting 2-mers from chr9.............DONE! -- 3.36 secs Extracting 2-mers from chr10............DONE! -- 3.08 secs Extracting 2-mers from chr11............DONE! -- 3.39 secs Extracting 2-mers from chr12............DONE! -- 3.03 secs Extracting 2-mers from chr13............DONE! -- 2.64 secs Extracting 2-mers from chr14............DONE! -- 2.24 secs Extracting 2-mers from chr15............DONE! -- 2.18 secs Extracting 2-mers from chr16............DONE! -- 1.97 secs Extracting 2-mers from chr17............DONE! -- 2.33 secs Extracting 2-mers from chr18............DONE! -- 1.77 secs Extracting 2-mers from chr19............DONE! -- 1.32 secs Extracting 2-mers from chr20............DONE! -- 1.4 secs Extracting 2-mers from chr21............DONE! -- 1.02 secs Extracting 2-mers from chr22............DONE! -- 1.04 secs Total time taken: 1.14 mins ------------------------------------------------------------ Extraction of Control K-mers ------------------------------------------------------------ Building control regions of chr1........DONE! -- 5.88 secs Building control regions of chr2........DONE! -- 5.54 secs Building control regions of chr3........DONE! -- 4.46 secs Building control regions of chr4........DONE! -- 4.3 secs Building control regions of chr5........DONE! -- 4.1 secs Building control regions of chr6........DONE! -- 4.02 secs Building control regions of chr7........DONE! -- 3.58 secs Building control regions of chr8........DONE! -- 2.9 secs Building control regions of chr9........DONE! -- 3.41 secs Building control regions of chr10.......DONE! -- 3 secs Building control regions of chr11.......DONE! -- 3.23 secs Building control regions of chr12.......DONE! -- 2.73 secs Building control regions of chr13.......DONE! -- 2.78 secs Building control regions of chr14.......DONE! -- 2.13 secs Building control regions of chr15.......DONE! -- 2.14 secs Building control regions of chr16.......DONE! -- 2.26 secs Building control regions of chr17.......DONE! -- 1.65 secs Building control regions of chr18.......DONE! -- 1.6 secs Building control regions of chr19.......DONE! -- 1.37 secs Building control regions of chr20.......DONE! -- 1.47 secs Building control regions of chr21.......DONE! -- 1.42 secs Building control regions of chr22.......DONE! -- 0.98 secs Total time taken: 1.08 mins Extracting 2-mers from chr1.............DONE! -- 5.48 secs Extracting 2-mers from chr2.............DONE! -- 5.49 secs Extracting 2-mers from chr3.............DONE! -- 4.55 secs Extracting 2-mers from chr4.............DONE! -- 4.3 secs Extracting 2-mers from chr5.............DONE! -- 4.14 secs Extracting 2-mers from chr6.............DONE! -- 3.9 secs Extracting 2-mers from chr7.............DONE! -- 3.85 secs Extracting 2-mers from chr8.............DONE! -- 3.15 secs Extracting 2-mers from chr9.............DONE! -- 3.28 secs Extracting 2-mers from chr10............DONE! -- 2.95 secs Extracting 2-mers from chr11............DONE! -- 3.24 secs Extracting 2-mers from chr12............DONE! -- 2.88 secs Extracting 2-mers from chr13............DONE! -- 2.66 secs Extracting 2-mers from chr14............DONE! -- 2.16 secs Extracting 2-mers from chr15............DONE! -- 1.98 secs Extracting 2-mers from chr16............DONE! -- 1.87 secs Extracting 2-mers from chr17............DONE! -- 2.08 secs Extracting 2-mers from chr18............DONE! -- 1.71 secs Extracting 2-mers from chr19............DONE! -- 1.25 secs Extracting 2-mers from chr20............DONE! -- 1.32 secs Extracting 2-mers from chr21............DONE! -- 1.17 secs Extracting 2-mers from chr22............DONE! -- 0.95 secs Total time taken: 1.08 mins ------------------------------------------------------------ Calculation of K-mer Susceptibility ------------------------------------------------------------ The 2-mer scores are saved at D:\temp\RtmpmczmtA/score_2-mer.csv FINISH! Total time taken: 3.3 mins [ FAIL 0 | WARN 0 | SKIP 2 | PASS 0 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • On CRAN (2): 'test_score.R:44:3', 'test_score.R:50:3' [ FAIL 0 | WARN 0 | SKIP 2 | PASS 0 ] > > proc.time() user system elapsed 181.00 15.34 201.95