* installing *source* package 'kmeRtone' ...
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 12.3.0'
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/stringi/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rhtslib/include' -I'D:/RCompile/CRANpkg/lib/4.4/zlibbioc/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/stringi/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rhtslib/include' -I'D:/RCompile/CRANpkg/lib/4.4/zlibbioc/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c countKmers.cpp -o countKmers.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/stringi/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rhtslib/include' -I'D:/RCompile/CRANpkg/lib/4.4/zlibbioc/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c countMidPatternContext.cpp -o countMidPatternContext.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/stringi/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rhtslib/include' -I'D:/RCompile/CRANpkg/lib/4.4/zlibbioc/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c countMidPatternContext2.cpp -o countMidPatternContext2.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/stringi/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rhtslib/include' -I'D:/RCompile/CRANpkg/lib/4.4/zlibbioc/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c countMidPatternKmers.cpp -o countMidPatternKmers.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/stringi/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rhtslib/include' -I'D:/RCompile/CRANpkg/lib/4.4/zlibbioc/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c countMidPatternRangedKmers.cpp -o countMidPatternRangedKmers.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/stringi/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rhtslib/include' -I'D:/RCompile/CRANpkg/lib/4.4/zlibbioc/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c countPointContext.cpp -o countPointContext.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/stringi/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rhtslib/include' -I'D:/RCompile/CRANpkg/lib/4.4/zlibbioc/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c countPointContext2.cpp -o countPointContext2.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/stringi/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rhtslib/include' -I'D:/RCompile/CRANpkg/lib/4.4/zlibbioc/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c countRangedKmers.cpp -o countRangedKmers.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/stringi/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rhtslib/include' -I'D:/RCompile/CRANpkg/lib/4.4/zlibbioc/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c countSlidingWindow.cpp -o countSlidingWindow.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/stringi/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rhtslib/include' -I'D:/RCompile/CRANpkg/lib/4.4/zlibbioc/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c countSlidingWindow2.cpp -o countSlidingWindow2.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/stringi/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rhtslib/include' -I'D:/RCompile/CRANpkg/lib/4.4/zlibbioc/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c count_substring_fixed.cpp -o count_substring_fixed.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/stringi/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rhtslib/include' -I'D:/RCompile/CRANpkg/lib/4.4/zlibbioc/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c count_substring_regex.cpp -o count_substring_regex.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/stringi/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rhtslib/include' -I'D:/RCompile/CRANpkg/lib/4.4/zlibbioc/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c import_stringi.cpp -o import_stringi.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/stringi/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rhtslib/include' -I'D:/RCompile/CRANpkg/lib/4.4/zlibbioc/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c readBCF.cpp -o readBCF.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/stringi/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rhtslib/include' -I'D:/RCompile/CRANpkg/lib/4.4/zlibbioc/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c readSingleFASTA.cpp -o readSingleFASTA.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/stringi/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rhtslib/include' -I'D:/RCompile/CRANpkg/lib/4.4/zlibbioc/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c simulatePopulation.cpp -o simulatePopulation.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/stringi/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rhtslib/include' -I'D:/RCompile/CRANpkg/lib/4.4/zlibbioc/include'   -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c splitFASTA2.cpp -o splitFASTA2.o
g++ -std=gnu++17 -shared -s -static-libgcc -o kmeRtone.dll tmp.def RcppExports.o countKmers.o countMidPatternContext.o countMidPatternContext2.o countMidPatternKmers.o countMidPatternRangedKmers.o countPointContext.o countPointContext2.o countRangedKmers.o countSlidingWindow.o countSlidingWindow2.o count_substring_fixed.o count_substring_regex.o import_stringi.o readBCF.o readSingleFASTA.o simulatePopulation.o splitFASTA2.o D:/RCompile/CRANpkg/lib/4.4/Rhtslib/usrlib/x64/libhts.a -lz -lm -lbz2 -llzma -lcurl -lbcrypt -lidn2 -lunistring -liconv -lssl -lcrypto -lcrypt32 -lwsock32 -lwldap32 -lssh2 -lgcrypt -lgpg-error -lws2_32 -lzstd -lregex -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
D:\rtools43\x86_64-w64-mingw32.static.posix\bin/ld.exe: readSingleFASTA.o:readSingleFASTA.cpp:(.text+0x18f3): undefined reference to `bioc_gzopen'
D:\rtools43\x86_64-w64-mingw32.static.posix\bin/ld.exe: readSingleFASTA.o:readSingleFASTA.cpp:(.text+0x192d): undefined reference to `bioc_gzread'
D:\rtools43\x86_64-w64-mingw32.static.posix\bin/ld.exe: readSingleFASTA.o:readSingleFASTA.cpp:(.text+0x194e): undefined reference to `bioc_gzeof'
D:\rtools43\x86_64-w64-mingw32.static.posix\bin/ld.exe: readSingleFASTA.o:readSingleFASTA.cpp:(.text+0x1a06): undefined reference to `bioc_gzclose'
D:\rtools43\x86_64-w64-mingw32.static.posix\bin/ld.exe: splitFASTA2.o:splitFASTA2.cp:(.text+0x2e2): undefined reference to `bioc_gzopen'
D:\rtools43\x86_64-w64-mingw32.static.posix\bin/ld.exe: splitFASTA2.o:splitFASTA2.cp:(.text+0x3f9): undefined reference to `bioc_gzeof'
D:\rtools43\x86_64-w64-mingw32.static.posix\bin/ld.exe: splitFASTA2.o:splitFASTA2.cp:(.text+0x432): undefined reference to `bioc_gzread'
D:\rtools43\x86_64-w64-mingw32.static.posix\bin/ld.exe: splitFASTA2.o:splitFASTA2.cp:(.text+0x1209): undefined reference to `bioc_gzclose'
collect2.exe: error: ld returned 1 exit status
no DLL was created
ERROR: compilation failed for package 'kmeRtone'
* removing 'd:/RCompile/CRANincoming/R-devel/lib/kmeRtone'