downloading reverse dependencies ... downloading DBpower_0.1.0.tar.gz ... ok downloading fastverse_0.3.3.tar.gz ... ok downloading text2map_0.2.0.tar.gz ... ok downloading vvauditor_0.6.0.tar.gz ... ok downloading collapse_2.0.16.tar.gz ... ok downloading tinycodet_0.5.3.tar.gz ... ok installing dependencies ‘fastverse’, ‘findR’, ‘GBJ’, ‘kit’ begin installing package ‘GBJ’ begin installing package ‘kit’ begin installing package ‘findR’ * installing *source* package ‘findR’ ... ** package ‘findR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (findR) * installing *source* package ‘kit’ ... ** package ‘kit’ successfully unpacked and MD5 sums checked ** using staged installation *** On Linux and OpenMP supported! ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpH8kL0a/R.INSTALLa4d7d2c8546e8/kit/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dup.c -o dup.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dupLen.c -o dupLen.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fpos.c -o fpos.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c iif.c -o iif.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nswitch.c -o nswitch.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c psort.c -o psort.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c psum.c -o psum.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c share.c -o share.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c topn.c -o topn.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vswitch.c -o vswitch.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o kit.so dup.o dupLen.o fpos.o iif.o init.o nswitch.o psort.o psum.o share.o topn.o utils.o vswitch.o -fopenmp -lrt -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpH8kL0a/R.INSTALLa4d7d2c8546e8/kit/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-kit/00new/kit/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kit) begin installing package ‘fastverse’ * installing *source* package ‘GBJ’ ... ** package ‘GBJ’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRXgjPa/R.INSTALLa4d8172da6cdc/GBJ/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ebb_crossprob_cor_R.cpp -o ebb_crossprob_cor_R.o ebb_crossprob_cor_R.cpp: In function ‘double calc_qka(const int&, const int&, const int&, const std::vector&, const std::vector&, const bool&, const double&, const double&)’: ebb_crossprob_cor_R.cpp:375:14: warning: unused variable ‘all_EBB_status’ [-Wunused-variable] 375 | bool all_EBB_status = eval_EBB_PMF_allN((d-k+1), | ^~~~~~~~~~~~~~ ebb_crossprob_cor_R.cpp: In function ‘double calc_allq(const int&, const std::vector&, const std::vector&, const bool&)’: ebb_crossprob_cor_R.cpp:453:10: warning: unused variable ‘filled_logftable’ [-Wunused-variable] 453 | bool filled_logftable = create_logftable(d, | ^~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o GBJ.so RcppExports.o ebb_crossprob_cor_R.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRXgjPa/R.INSTALLa4d8172da6cdc/GBJ/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-GBJ/00new/GBJ/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GBJ) * installing *source* package ‘fastverse’ ... ** package ‘fastverse’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastverse) checking kit_0.0.19.tar.gz ... checking DBpower_0.1.0.tar.gz ... checking fastverse_0.3.3.tar.gz ... checking text2map_0.2.0.tar.gz ... checking vvauditor_0.6.0.tar.gz ... checking collapse_2.0.16.tar.gz ... checking tinycodet_0.5.3.tar.gz ... Depends: Package: kit Depends: R (>= 3.1.0) Timings: user system elapsed kit 26.441 3.832 30.917 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 1 5 Check results summary: kit ... OK rdepends_collapse ... NOTE * checking compiled code ... NOTE rdepends_DBpower ... OK rdepends_fastverse ... OK rdepends_text2map ... OK rdepends_tinycodet ... OK rdepends_vvauditor ... OK