downloading reverse dependencies ... downloading SEMdeep_1.0.0.tar.gz ... ok downloading survex_1.2.0.tar.gz ... ok installing dependencies ‘censored’, ‘cito’, ‘kernelshap’, ‘NeuralNetTools’, ‘SEMgraph’, ‘treeshap’ also installing the dependencies ‘cherry’, ‘someMTP’, ‘aspect’, ‘flip’, ‘protoclust’, ‘parabar’, ‘torchvision’ begin installing package ‘cherry’ begin installing package ‘aspect’ begin installing package ‘someMTP’ begin installing package ‘protoclust’ begin installing package ‘torchvision’ begin installing package ‘parabar’ begin installing package ‘kernelshap’ begin installing package ‘NeuralNetTools’ begin installing package ‘censored’ begin installing package ‘treeshap’ * installing *source* package ‘protoclust’ ... ** this is package ‘protoclust’ version ‘1.6.4’ ** package ‘protoclust’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYjbKc7/R.INSTALL1936c613317715/protoclust/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hier.c -o hier.o hier.c: In function ‘hier’: hier.c:194:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 194 | for(j = 0; j < imerge; j++) | ^~~ hier.c:204:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 204 | ii = lt(imerge+1,imerge,n); | ^~ hier.c: In function ‘minimaxpoint’: hier.c:442:10: warning: ‘mm’ may be used uninitialized [-Wmaybe-uninitialized] 442 | return mm; | ^~ hier.c:428:7: note: ‘mm’ was declared here 428 | int mm; | ^~ hier.c: In function ‘findNN’: hier.c:346:29: warning: ‘nn’ may be used uninitialized [-Wmaybe-uninitialized] 346 | mincomplete = completelink(dmax, n, clusters[nn], nn, clusters[i], i); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hier.c:328:7: note: ‘nn’ was declared here 328 | int nn; | ^~ hier.c: In function ‘hier’: hier.c:274:26: warning: ‘imerge’ may be used uninitialized [-Wmaybe-uninitialized] 274 | Cluster *cur = clusters[imerge]; | ^ hier.c:28:20: note: ‘imerge’ was declared here 28 | int i, j, k, ii, imerge, jmerge, reverse; | ^~~~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c protoclust_init.c -o protoclust_init.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o protoclust.so hier.o protoclust_init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYjbKc7/R.INSTALL1936c613317715/protoclust/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-protoclust/00new/protoclust/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (protoclust) * installing *source* package ‘kernelshap’ ... ** this is package ‘kernelshap’ version ‘0.8.0’ ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kernelshap) * installing *source* package ‘aspect’ ... ** this is package ‘aspect’ version ‘1.0-7’ ** package ‘aspect’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (aspect) * installing *source* package ‘someMTP’ ... ** this is package ‘someMTP’ version ‘1.4.1.1’ ** package ‘someMTP’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (someMTP) * installing *source* package ‘cherry’ ... ** this is package ‘cherry’ version ‘0.6-15’ ** package ‘cherry’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cherry) begin installing package ‘flip’ * installing *source* package ‘NeuralNetTools’ ... ** this is package ‘NeuralNetTools’ version ‘1.5.3’ ** package ‘NeuralNetTools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NeuralNetTools) * installing *source* package ‘torchvision’ ... ** this is package ‘torchvision’ version ‘0.6.0’ ** package ‘torchvision’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (torchvision) * installing *source* package ‘flip’ ... ** this is package ‘flip’ version ‘2.5.1’ ** package ‘flip’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flip) begin installing package ‘SEMgraph’ * installing *source* package ‘parabar’ ... ** this is package ‘parabar’ version ‘1.4.2’ ** package ‘parabar’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (parabar) begin installing package ‘cito’ * installing *source* package ‘censored’ ... ** this is package ‘censored’ version ‘0.3.3’ ** package ‘censored’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (censored) * installing *source* package ‘cito’ ... ** this is package ‘cito’ version ‘1.1’ ** package ‘cito’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cito) * installing *source* package ‘treeshap’ ... ** this is package ‘treeshap’ version ‘0.3.1’ ** package ‘treeshap’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp1Xs5kG/R.INSTALL1936ca571559ec/treeshap/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c predict.cpp -o predict.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c set_reference_dataset.cpp -o set_reference_dataset.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c treeshap.cpp -o treeshap.o treeshap.cpp: In function ‘void recurse(const Rcpp::IntegerVector&, const Rcpp::IntegerVector&, const Rcpp::IntegerVector&, const Rcpp::IntegerVector&, const Rcpp::LogicalVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::NumericVector&, const Rcpp::IntegerVector&, const Rcpp::NumericVector&, const Rcpp::LogicalVector&, Rcpp::NumericVector&, Path&, int, tnumeric, bool, int, int, int, tnumeric)’: treeshap.cpp:131:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 131 | for (int i = 1; i < m.size(); ++i) { | ~~^~~~~~~~~~ treeshap.cpp:139:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 139 | for (int k = 1; k < m.size(); ++k) { | ~~^~~~~~~~~~ g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o treeshap.so RcppExports.o predict.o set_reference_dataset.o treeshap.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp1Xs5kG/R.INSTALL1936ca571559ec/treeshap/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-treeshap/00new/treeshap/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (treeshap) * installing *source* package ‘SEMgraph’ ... ** this is package ‘SEMgraph’ version ‘1.2.3’ ** package ‘SEMgraph’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SEMgraph) checking kernelshap_0.8.0.tar.gz ... checking SEMdeep_1.0.0.tar.gz ... checking survex_1.2.0.tar.gz ... Depends: Package: kernelshap Depends: R (>= 3.2.0) Imports: foreach, MASS, stats, utils Timings: user system elapsed kernelshap 25.865 3.168 31.762 Results: Check status summary: NOTE OK Source packages 1 0 Reverse depends 0 2 Check results summary: kernelshap ... NOTE * checking CRAN incoming feasibility ... [5s/8s] NOTE rdepends_SEMdeep ... OK rdepends_survex ... OK Check results changes: Package: SEMdeep Check: whether the package can be loaded Old result: ERROR New result: OK