* using log directory 'd:/RCompile/CRANincoming/R-devel/kDGLM.Rcheck' * using R Under development (unstable) (2024-05-15 r86556 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'kDGLM/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'kDGLM' version '1.1.6' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Silvaneo dos Santos ' New submission Possibly misspelled words in DESCRIPTION: Generialized (4:9) Kalman (10:35) kDGLM (3:8) Unknown, possibly misspelled, fields in DESCRIPTION: 'Page' Found the following (possibly) invalid URLs: URL: http://www.sciencedirect.com/science/article/B6V92-4K18VK5-1/1/227cef013b86100791c53712fae7677c (moved to https://www.sciencedirect.com/science/article/B6V92-4K18VK5-1/1/227cef013b86100791c53712fae7677c) From: inst/doc/fitting.html Status: 301 Message: Moved Permanently For content that is 'Moved Permanently', please change http to https, add trailing slashes, or replace the old by the new URL. Found the following (possibly) invalid file URIs: URI: https//arxiv.org/abs/2201.05387 From: inst/CITATION URI: hadley@rstudio.com From: README.md URI: max@rstudio.com From: README.md URI: davis@rstudio.com From: README.md URI: silvaneo@dme.ufrj.br From: README.md The Title field starts with the package name. The Title field should be in title case. Current version is: 'kDGLM: an R package for Bayesian analysis of Dynamic Generialized Linear Models' In title case that is: 'kDGLM: An R Package for Bayesian Analysis of Dynamic Generialized Linear Models' Found the following \keyword or \concept entries with Rd markup: File 'CAR_prior.Rd': \concept{{auxiliary functions for defining priors} [TRUNCATED] File 'Gamma.Rd': \concept{{auxiliary functions for a creating outco [TRUNCATED] File 'Multinom.Rd': \concept{{auxiliary functions for a creating outco [TRUNCATED] File 'Normal.Rd': \concept{{auxiliary functions for a creating outco [TRUNCATED] File 'Poisson.Rd': \concept{{auxiliary functions for a creating outco [TRUNCATED] File 'TF_block.Rd': \concept{{auxiliary functions for structural block [TRUNCATED] File 'block_mult.Rd': \concept{{auxiliary functions for structural block [TRUNCATED] File 'block_rename.Rd': \concept{{auxiliary functions for structural block [TRUNCATED] File 'block_superpos.Rd': \concept{{auxiliary functions for structural block [TRUNCATED] File 'coef.fitted_dlm.Rd': \concept{{auxiliary functions for fitted_dlm objec [TRUNCATED] File 'convert_Gamma_Normal.Rd': \concept{{auxiliary functions for a Gamma outcome [TRUNCATED] File 'convert_Multinom_Normal.Rd': \concept{{auxiliary functions for a Multinomial ou [TRUNCATED] File 'convert_Normal_Gamma.Rd': \concept{{auxiliary functions for a Gamma outcome [TRUNCATED] File 'convert_Normal_Multinom.Rd': \concept{{auxiliary functions for a Multinomial ou [TRUNCATED] File 'convert_Normal_Poisson.Rd': \concept{{auxiliary functions for a Poisson outcom [TRUNCATED] File 'convert_Poisson_Normal.Rd': \concept{{auxiliary functions for a Poisson outcom [TRUNCATED] File 'convert_multi_NG_Normal.Rd': \concept{{auxiliary functions for a Normal outcome [TRUNCATED] File 'dlm_sampling.Rd': \concept{{auxiliary functions for fitted_dlm objec [TRUNCATED] File 'eval_dlm_norm_const.Rd': \concept{{auxiliary functions for fitted_dlm objec [TRUNCATED] File 'fit_model.Rd': \concept{{auxiliary functions for fitted_dlm objec [TRUNCATED] File 'forecast.fitted_dlm.Rd': \concept{{auxiliary functions for fitted_dlm objec [TRUNCATED] File 'gamma_pred.Rd': \concept{{auxiliary functions for a Gamma outcome [TRUNCATED] File 'harmonic_block.Rd': \concept{{auxiliary functions for structural block [TRUNCATED] File 'intervention.Rd': \concept{{auxiliary functions for structural block [TRUNCATED] File 'joint_prior.Rd': \concept{{auxiliary functions for defining priors} [TRUNCATED] File 'multi_normal_gamma_pred.Rd': \concept{{auxiliary functions for a Normal outcome [TRUNCATED] File 'multnom_pred.Rd': \concept{{auxiliary functions for a Multinomial ou [TRUNCATED] File 'noise_block.Rd': \concept{{auxiliary functions for structural block [TRUNCATED] File 'normal_pred.Rd': \concept{{auxiliary functions for a Normal outcome [TRUNCATED] File 'plot.dlm_coef.Rd': \concept{{auxiliary visualization functions for th [TRUNCATED] File 'plot.fitted_dlm.Rd': \concept{{auxiliary visualization functions for th [TRUNCATED] File 'poisson_pred.Rd': \concept{{auxiliary functions for a Poisson outcom [TRUNCATED] File 'polynomial_block.Rd': \concept{{auxiliary functions for structural block [TRUNCATED] File 'regression_block.Rd': \concept{{auxiliary functions for structural block [TRUNCATED] File 'set.block.value.Rd': \concept{{auxiliary functions for structural block [TRUNCATED] File 'smoothing.Rd': \concept{{auxiliary functions for fitted_dlm objec [TRUNCATED] File 'summary.dlm_block.Rd': \concept{{auxiliary functions for structural block [TRUNCATED] File 'summary.dlm_distr.Rd': \concept{{Reports for dlm_distr objects.}} \concept{{auxiliary functions for a creating outco [TRUNCATED] File 'summary.fitted_dlm.Rd': \concept{{auxiliary visualization functions for th [TRUNCATED] File 'summary.searched_dlm.Rd': \concept{{auxiliary visualization functions for th [TRUNCATED] File 'update.fitted_dlm.Rd': \concept{{auxiliary functions for fitted_dlm objec [TRUNCATED] File 'update_Gamma.Rd': \concept{{auxiliary functions for a Gamma outcome [TRUNCATED] File 'update_Multinom.Rd': \concept{{auxiliary functions for a Multinomial ou [TRUNCATED] File 'update_Normal.Rd': \concept{{auxiliary functions for a Normal outcome [TRUNCATED] File 'update_Poisson.Rd': \concept{{auxiliary functions for a Poisson outcom [TRUNCATED] File 'zero_sum_prior.Rd': \concept{{auxiliary functions for defining priors} [TRUNCATED] * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'kDGLM' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [13s] OK * checking Rd files ... NOTE checkRd: (-1) CAR_prior.Rd:60: Lost braces; missing escapes or markup? 60 | Other {auxiliary functions for defining priors}.: | ^ checkRd: (-1) Gamma.Rd:59: Lost braces; missing escapes or markup? 59 | Other {auxiliary functions for a creating outcomes}: | ^ checkRd: (-1) Multinom.Rd:51: Lost braces; missing escapes or markup? 51 | Other {auxiliary functions for a creating outcomes}: | ^ checkRd: (-1) Normal.Rd:64: Lost braces; missing escapes or markup? 64 | Other {auxiliary functions for a creating outcomes}: | ^ checkRd: (-1) Poisson.Rd:50: Lost braces; missing escapes or markup? 50 | Other {auxiliary functions for a creating outcomes}: | ^ checkRd: (-1) TF_block.Rd:135: Lost braces; missing escapes or markup? 135 | Other {auxiliary functions for structural blocks}: | ^ checkRd: (-1) block_mult.Rd:31: Lost braces; missing escapes or markup? 31 | Other {auxiliary functions for structural blocks}: | ^ checkRd: (-1) block_rename.Rd:33: Lost braces; missing escapes or markup? 33 | Other {auxiliary functions for structural blocks}: | ^ checkRd: (-1) block_superpos.Rd:40: Lost braces; missing escapes or markup? 40 | Other {auxiliary functions for structural blocks}: | ^ checkRd: (-1) coef.fitted_dlm.Rd:67: Lost braces; missing escapes or markup? 67 | Other {auxiliary functions for fitted_dlm objects}: | ^ checkRd: (-1) convert_Gamma_Normal.Rd:24: Lost braces; missing escapes or markup? 24 | Other {auxiliary functions for a Gamma outcome with known shape}: | ^ checkRd: (-1) convert_Multinom_Normal.Rd:24: Lost braces; missing escapes or markup? 24 | Other {auxiliary functions for a Multinomial outcome}: | ^ checkRd: (-1) convert_Normal_Gamma.Rd:22: Lost braces; missing escapes or markup? 22 | Other {auxiliary functions for a Gamma outcome with known shape}: | ^ checkRd: (-1) convert_Normal_Multinom.Rd:22: Lost braces; missing escapes or markup? 22 | Other {auxiliary functions for a Multinomial outcome}: | ^ checkRd: (-1) convert_Normal_Poisson.Rd:22: Lost braces; missing escapes or markup? 22 | Other {auxiliary functions for a Poisson outcome}: | ^ checkRd: (-1) convert_Poisson_Normal.Rd:24: Lost braces; missing escapes or markup? 24 | Other {auxiliary functions for a Poisson outcome}: | ^ checkRd: (-1) convert_multi_NG_Normal.Rd:25: Lost braces; missing escapes or markup? 25 | Other {auxiliary functions for a Normal outcome}: | ^ checkRd: (-1) dlm_sampling.Rd:39: Lost braces; missing escapes or markup? 39 | Other {auxiliary functions for fitted_dlm objects}: | ^ checkRd: (-1) eval_dlm_norm_const.Rd:35: Lost braces; missing escapes or markup? 35 | Other {auxiliary functions for fitted_dlm objects}: | ^ checkRd: (-1) fit_model.Rd:151: Lost braces; missing escapes or markup? 151 | Other {auxiliary functions for fitted_dlm objects}: | ^ checkRd: (-1) forecast.fitted_dlm.Rd:75: Lost braces; missing escapes or markup? 75 | Other {auxiliary functions for fitted_dlm objects}: | ^ checkRd: (-1) gamma_pred.Rd:34: Lost braces; missing escapes or markup? 34 | Other {auxiliary functions for a Gamma outcome with known shape}: | ^ checkRd: (-1) harmonic_block.Rd:94: Lost braces; missing escapes or markup? 94 | Other {auxiliary functions for structural blocks}: | ^ checkRd: (-1) intervention.Rd:64: Lost braces; missing escapes or markup? 64 | Other {auxiliary functions for structural blocks}: | ^ checkRd: (-1) joint_prior.Rd:44: Lost braces; missing escapes or markup? 44 | Other {auxiliary functions for defining priors}.: | ^ checkRd: (-1) multi_normal_gamma_pred.Rd:39: Lost braces; missing escapes or markup? 39 | Other {auxiliary functions for a Normal outcome}: | ^ checkRd: (-1) multnom_pred.Rd:34: Lost braces; missing escapes or markup? 34 | Other {auxiliary functions for a Multinomial outcome}: | ^ checkRd: (-1) noise_block.Rd:61: Lost braces; missing escapes or markup? 61 | Other {auxiliary functions for structural blocks}: | ^ checkRd: (-1) normal_pred.Rd:34: Lost braces; missing escapes or markup? 34 | Other {auxiliary functions for a Normal outcome}: | ^ checkRd: (-1) plot.dlm_coef.Rd:56: Lost braces; missing escapes or markup? 56 | Other {auxiliary visualization functions for the fitted_dlm class}: | ^ checkRd: (-1) plot.fitted_dlm.Rd:62: Lost braces; missing escapes or markup? 62 | Other {auxiliary visualization functions for the fitted_dlm class}: | ^ checkRd: (-1) poisson_pred.Rd:34: Lost braces; missing escapes or markup? 34 | Other {auxiliary functions for a Poisson outcome}: | ^ checkRd: (-1) polynomial_block.Rd:91: Lost braces; missing escapes or markup? 91 | Other {auxiliary functions for structural blocks}: | ^ checkRd: (-1) regression_block.Rd:96: Lost braces; missing escapes or markup? 96 | Other {auxiliary functions for structural blocks}: | ^ checkRd: (-1) set.block.value.Rd:26: Lost braces; missing escapes or markup? 26 | Other {auxiliary functions for structural blocks}: | ^ checkRd: (-1) smoothing.Rd:19: Lost braces; missing escapes or markup? 19 | Other {auxiliary functions for fitted_dlm objects}: | ^ checkRd: (-1) summary.dlm_block.Rd:16: Lost braces; missing escapes or markup? 16 | Other {auxiliary functions for structural blocks}: | ^ checkRd: (-1) summary.dlm_distr.Rd:16: Lost braces; missing escapes or markup? 16 | Other {auxiliary functions for a creating outcomes}: | ^ checkRd: (-1) summary.fitted_dlm.Rd:51: Lost braces; missing escapes or markup? 51 | Other {auxiliary visualization functions for the fitted.dlm class}: | ^ checkRd: (-1) summary.searched_dlm.Rd:16: Lost braces; missing escapes or markup? 16 | Other {auxiliary visualization functions for the fitted.dlm class}: | ^ checkRd: (-1) update.fitted_dlm.Rd:46: Lost braces; missing escapes or markup? 46 | Other {auxiliary functions for fitted_dlm objects}: | ^ checkRd: (-1) update_Gamma.Rd:27: Lost braces; missing escapes or markup? 27 | Other {auxiliary functions for a Gamma outcome with known shape}: | ^ checkRd: (-1) update_Multinom.Rd:27: Lost braces; missing escapes or markup? 27 | Other {auxiliary functions for a Multinomial outcome}: | ^ checkRd: (-1) update_Normal.Rd:27: Lost braces; missing escapes or markup? 27 | Other {auxiliary functions for a Normal outcome}: | ^ checkRd: (-1) update_Poisson.Rd:27: Lost braces; missing escapes or markup? 27 | Other {auxiliary functions for a Poisson outcome}: | ^ checkRd: (-1) zero_sum_prior.Rd:42: Lost braces; missing escapes or markup? 42 | Other {auxiliary functions for defining priors}.: | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [20s] NOTE Examples with CPU (user + system) or elapsed time > 10s user system elapsed fit_model 11.25 0.25 11.5 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [125s] OK * checking PDF version of manual ... [19s] OK * checking HTML version of manual ... [12s] OK * DONE Status: 3 NOTEs