* using log directory ‘/srv/hornik/tmp/CRAN/kDGLM.Rcheck’ * using R Under development (unstable) (2024-05-15 r86556) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.4 (1) Debian flang-new version 18.1.4 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘kDGLM/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘kDGLM’ version ‘1.1.6’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [4s/7s] NOTE Maintainer: ‘Silvaneo dos Santos ’ New submission Possibly misspelled words in DESCRIPTION: Generialized (4:9) Kalman (10:35) kDGLM (3:8) Unknown, possibly misspelled, fields in DESCRIPTION: ‘Page’ Found the following (possibly) invalid URLs: URL: http://www.sciencedirect.com/science/article/B6V92-4K18VK5-1/1/227cef013b86100791c53712fae7677c (moved to https://www.sciencedirect.com/science/article/B6V92-4K18VK5-1/1/227cef013b86100791c53712fae7677c) From: inst/doc/fitting.html Status: 301 Message: Moved Permanently URL: https://www.ibge.gov.br/estatisticas/sociais/populacao.html From: man/gastroBR.Rd Status: Error Message: server certificate verification failed. CAfile: none CRLfile: none (Status without verification: OK) For content that is 'Moved Permanently', please change http to https, add trailing slashes, or replace the old by the new URL. Found the following (possibly) invalid file URIs: URI: https//arxiv.org/abs/2201.05387 From: inst/CITATION URI: hadley@rstudio.com From: README.md URI: max@rstudio.com From: README.md URI: davis@rstudio.com From: README.md URI: silvaneo@dme.ufrj.br From: README.md The Title field starts with the package name. The Title field should be in title case. Current version is: ‘kDGLM: an R package for Bayesian analysis of Dynamic Generialized Linear Models’ In title case that is: ‘kDGLM: An R Package for Bayesian Analysis of Dynamic Generialized Linear Models’ Found the following \keyword or \concept entries with Rd markup: File ‘CAR_prior.Rd’: \concept{{auxiliary functions for defining priors} [TRUNCATED] File ‘Gamma.Rd’: \concept{{auxiliary functions for a creating outco [TRUNCATED] File ‘Multinom.Rd’: \concept{{auxiliary functions for a creating outco [TRUNCATED] File ‘Normal.Rd’: \concept{{auxiliary functions for a creating outco [TRUNCATED] File ‘Poisson.Rd’: \concept{{auxiliary functions for a creating outco [TRUNCATED] File ‘TF_block.Rd’: \concept{{auxiliary functions for structural block [TRUNCATED] File ‘block_mult.Rd’: \concept{{auxiliary functions for structural block [TRUNCATED] File ‘block_rename.Rd’: \concept{{auxiliary functions for structural block [TRUNCATED] File ‘block_superpos.Rd’: \concept{{auxiliary functions for structural block [TRUNCATED] File ‘coef.fitted_dlm.Rd’: \concept{{auxiliary functions for fitted_dlm objec [TRUNCATED] File ‘convert_Gamma_Normal.Rd’: \concept{{auxiliary functions for a Gamma outcome [TRUNCATED] File ‘convert_Multinom_Normal.Rd’: \concept{{auxiliary functions for a Multinomial ou [TRUNCATED] File ‘convert_Normal_Gamma.Rd’: \concept{{auxiliary functions for a Gamma outcome [TRUNCATED] File ‘convert_Normal_Multinom.Rd’: \concept{{auxiliary functions for a Multinomial ou [TRUNCATED] File ‘convert_Normal_Poisson.Rd’: \concept{{auxiliary functions for a Poisson outcom [TRUNCATED] File ‘convert_Poisson_Normal.Rd’: \concept{{auxiliary functions for a Poisson outcom [TRUNCATED] File ‘convert_multi_NG_Normal.Rd’: \concept{{auxiliary functions for a Normal outcome [TRUNCATED] File ‘dlm_sampling.Rd’: \concept{{auxiliary functions for fitted_dlm objec [TRUNCATED] File ‘eval_dlm_norm_const.Rd’: \concept{{auxiliary functions for fitted_dlm objec [TRUNCATED] File ‘fit_model.Rd’: \concept{{auxiliary functions for fitted_dlm objec [TRUNCATED] File ‘forecast.fitted_dlm.Rd’: \concept{{auxiliary functions for fitted_dlm objec [TRUNCATED] File ‘gamma_pred.Rd’: \concept{{auxiliary functions for a Gamma outcome [TRUNCATED] File ‘harmonic_block.Rd’: \concept{{auxiliary functions for structural block [TRUNCATED] File ‘intervention.Rd’: \concept{{auxiliary functions for structural block [TRUNCATED] File ‘joint_prior.Rd’: \concept{{auxiliary functions for defining priors} [TRUNCATED] File ‘multi_normal_gamma_pred.Rd’: \concept{{auxiliary functions for a Normal outcome [TRUNCATED] File ‘multnom_pred.Rd’: \concept{{auxiliary functions for a Multinomial ou [TRUNCATED] File ‘noise_block.Rd’: \concept{{auxiliary functions for structural block [TRUNCATED] File ‘normal_pred.Rd’: \concept{{auxiliary functions for a Normal outcome [TRUNCATED] File ‘plot.dlm_coef.Rd’: \concept{{auxiliary visualization functions for th [TRUNCATED] File ‘plot.fitted_dlm.Rd’: \concept{{auxiliary visualization functions for th [TRUNCATED] File ‘poisson_pred.Rd’: \concept{{auxiliary functions for a Poisson outcom [TRUNCATED] File ‘polynomial_block.Rd’: \concept{{auxiliary functions for structural block [TRUNCATED] File ‘regression_block.Rd’: \concept{{auxiliary functions for structural block [TRUNCATED] File ‘set.block.value.Rd’: \concept{{auxiliary functions for structural block [TRUNCATED] File ‘smoothing.Rd’: \concept{{auxiliary functions for fitted_dlm objec [TRUNCATED] File ‘summary.dlm_block.Rd’: \concept{{auxiliary functions for structural block [TRUNCATED] File ‘summary.dlm_distr.Rd’: \concept{{Reports for dlm_distr objects.}} \concept{{auxiliary functions for a creating outco [TRUNCATED] File ‘summary.fitted_dlm.Rd’: \concept{{auxiliary visualization functions for th [TRUNCATED] File ‘summary.searched_dlm.Rd’: \concept{{auxiliary visualization functions for th [TRUNCATED] File ‘update.fitted_dlm.Rd’: \concept{{auxiliary functions for fitted_dlm objec [TRUNCATED] File ‘update_Gamma.Rd’: \concept{{auxiliary functions for a Gamma outcome [TRUNCATED] File ‘update_Multinom.Rd’: \concept{{auxiliary functions for a Multinomial ou [TRUNCATED] File ‘update_Normal.Rd’: \concept{{auxiliary functions for a Normal outcome [TRUNCATED] File ‘update_Poisson.Rd’: \concept{{auxiliary functions for a Poisson outcom [TRUNCATED] File ‘zero_sum_prior.Rd’: \concept{{auxiliary functions for defining priors} [TRUNCATED] * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘kDGLM’ can be installed ... [4s/4s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking whether startup messages can be suppressed ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [10s/10s] OK * checking Rd files ... [1s/1s] NOTE checkRd: (-1) CAR_prior.Rd:60: Lost braces; missing escapes or markup? 60 | Other {auxiliary functions for defining priors}.: | ^ checkRd: (-1) Gamma.Rd:59: Lost braces; missing escapes or markup? 59 | Other {auxiliary functions for a creating outcomes}: | ^ checkRd: (-1) Multinom.Rd:51: Lost braces; missing escapes or markup? 51 | Other {auxiliary functions for a creating outcomes}: | ^ checkRd: (-1) Normal.Rd:64: Lost braces; missing escapes or markup? 64 | Other {auxiliary functions for a creating outcomes}: | ^ checkRd: (-1) Poisson.Rd:50: Lost braces; missing escapes or markup? 50 | Other {auxiliary functions for a creating outcomes}: | ^ checkRd: (-1) TF_block.Rd:135: Lost braces; missing escapes or markup? 135 | Other {auxiliary functions for structural blocks}: | ^ checkRd: (-1) block_mult.Rd:31: Lost braces; missing escapes or markup? 31 | Other {auxiliary functions for structural blocks}: | ^ checkRd: (-1) block_rename.Rd:33: Lost braces; missing escapes or markup? 33 | Other {auxiliary functions for structural blocks}: | ^ checkRd: (-1) block_superpos.Rd:40: Lost braces; missing escapes or markup? 40 | Other {auxiliary functions for structural blocks}: | ^ checkRd: (-1) coef.fitted_dlm.Rd:67: Lost braces; missing escapes or markup? 67 | Other {auxiliary functions for fitted_dlm objects}: | ^ checkRd: (-1) convert_Gamma_Normal.Rd:24: Lost braces; missing escapes or markup? 24 | Other {auxiliary functions for a Gamma outcome with known shape}: | ^ checkRd: (-1) convert_Multinom_Normal.Rd:24: Lost braces; missing escapes or markup? 24 | Other {auxiliary functions for a Multinomial outcome}: | ^ checkRd: (-1) convert_Normal_Gamma.Rd:22: Lost braces; missing escapes or markup? 22 | Other {auxiliary functions for a Gamma outcome with known shape}: | ^ checkRd: (-1) convert_Normal_Multinom.Rd:22: Lost braces; missing escapes or markup? 22 | Other {auxiliary functions for a Multinomial outcome}: | ^ checkRd: (-1) convert_Normal_Poisson.Rd:22: Lost braces; missing escapes or markup? 22 | Other {auxiliary functions for a Poisson outcome}: | ^ checkRd: (-1) convert_Poisson_Normal.Rd:24: Lost braces; missing escapes or markup? 24 | Other {auxiliary functions for a Poisson outcome}: | ^ checkRd: (-1) convert_multi_NG_Normal.Rd:25: Lost braces; missing escapes or markup? 25 | Other {auxiliary functions for a Normal outcome}: | ^ checkRd: (-1) dlm_sampling.Rd:39: Lost braces; missing escapes or markup? 39 | Other {auxiliary functions for fitted_dlm objects}: | ^ checkRd: (-1) eval_dlm_norm_const.Rd:35: Lost braces; missing escapes or markup? 35 | Other {auxiliary functions for fitted_dlm objects}: | ^ checkRd: (-1) fit_model.Rd:151: Lost braces; missing escapes or markup? 151 | Other {auxiliary functions for fitted_dlm objects}: | ^ checkRd: (-1) forecast.fitted_dlm.Rd:75: Lost braces; missing escapes or markup? 75 | Other {auxiliary functions for fitted_dlm objects}: | ^ checkRd: (-1) gamma_pred.Rd:34: Lost braces; missing escapes or markup? 34 | Other {auxiliary functions for a Gamma outcome with known shape}: | ^ checkRd: (-1) harmonic_block.Rd:94: Lost braces; missing escapes or markup? 94 | Other {auxiliary functions for structural blocks}: | ^ checkRd: (-1) intervention.Rd:64: Lost braces; missing escapes or markup? 64 | Other {auxiliary functions for structural blocks}: | ^ checkRd: (-1) joint_prior.Rd:44: Lost braces; missing escapes or markup? 44 | Other {auxiliary functions for defining priors}.: | ^ checkRd: (-1) multi_normal_gamma_pred.Rd:39: Lost braces; missing escapes or markup? 39 | Other {auxiliary functions for a Normal outcome}: | ^ checkRd: (-1) multnom_pred.Rd:34: Lost braces; missing escapes or markup? 34 | Other {auxiliary functions for a Multinomial outcome}: | ^ checkRd: (-1) noise_block.Rd:61: Lost braces; missing escapes or markup? 61 | Other {auxiliary functions for structural blocks}: | ^ checkRd: (-1) normal_pred.Rd:34: Lost braces; missing escapes or markup? 34 | Other {auxiliary functions for a Normal outcome}: | ^ checkRd: (-1) plot.dlm_coef.Rd:56: Lost braces; missing escapes or markup? 56 | Other {auxiliary visualization functions for the fitted_dlm class}: | ^ checkRd: (-1) plot.fitted_dlm.Rd:62: Lost braces; missing escapes or markup? 62 | Other {auxiliary visualization functions for the fitted_dlm class}: | ^ checkRd: (-1) poisson_pred.Rd:34: Lost braces; missing escapes or markup? 34 | Other {auxiliary functions for a Poisson outcome}: | ^ checkRd: (-1) polynomial_block.Rd:91: Lost braces; missing escapes or markup? 91 | Other {auxiliary functions for structural blocks}: | ^ checkRd: (-1) regression_block.Rd:96: Lost braces; missing escapes or markup? 96 | Other {auxiliary functions for structural blocks}: | ^ checkRd: (-1) set.block.value.Rd:26: Lost braces; missing escapes or markup? 26 | Other {auxiliary functions for structural blocks}: | ^ checkRd: (-1) smoothing.Rd:19: Lost braces; missing escapes or markup? 19 | Other {auxiliary functions for fitted_dlm objects}: | ^ checkRd: (-1) summary.dlm_block.Rd:16: Lost braces; missing escapes or markup? 16 | Other {auxiliary functions for structural blocks}: | ^ checkRd: (-1) summary.dlm_distr.Rd:16: Lost braces; missing escapes or markup? 16 | Other {auxiliary functions for a creating outcomes}: | ^ checkRd: (-1) summary.fitted_dlm.Rd:51: Lost braces; missing escapes or markup? 51 | Other {auxiliary visualization functions for the fitted.dlm class}: | ^ checkRd: (-1) summary.searched_dlm.Rd:16: Lost braces; missing escapes or markup? 16 | Other {auxiliary visualization functions for the fitted.dlm class}: | ^ checkRd: (-1) update.fitted_dlm.Rd:46: Lost braces; missing escapes or markup? 46 | Other {auxiliary functions for fitted_dlm objects}: | ^ checkRd: (-1) update_Gamma.Rd:27: Lost braces; missing escapes or markup? 27 | Other {auxiliary functions for a Gamma outcome with known shape}: | ^ checkRd: (-1) update_Multinom.Rd:27: Lost braces; missing escapes or markup? 27 | Other {auxiliary functions for a Multinomial outcome}: | ^ checkRd: (-1) update_Normal.Rd:27: Lost braces; missing escapes or markup? 27 | Other {auxiliary functions for a Normal outcome}: | ^ checkRd: (-1) update_Poisson.Rd:27: Lost braces; missing escapes or markup? 27 | Other {auxiliary functions for a Poisson outcome}: | ^ checkRd: (-1) zero_sum_prior.Rd:42: Lost braces; missing escapes or markup? 42 | Other {auxiliary functions for defining priors}.: | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [16s/16s] NOTE Examples with CPU (user + system) or elapsed time > 5s user system elapsed fit_model 8.874 0 8.874 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [88s/97s] OK * checking PDF version of manual ... [5s/5s] OK * checking HTML version of manual ... [2s/2s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 3 NOTEs