* using log directory ‘/srv/hornik/tmp/CRAN_pretest/jsmodule.Rcheck’
* using R Under development (unstable) (2025-07-01 r88373)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (3)
    Debian flang-new version 19.1.7 (3)
* running under: Debian GNU/Linux 13 (trixie)
* using session charset: UTF-8
* checking for file ‘jsmodule/DESCRIPTION’ ... OK
* this is package ‘jsmodule’ version ‘1.6.11’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/7s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘jsmodule’ can be installed ... [18s/18s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [3s/3s] OK
* checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
* checking whether the package can be unloaded cleanly ... [3s/3s] OK
* checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
* checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
* checking loading without being on the library search path ... [3s/3s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [29s/29s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [0m/30m] ERROR
Running examples in ‘jsmodule-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: timerocModule
> ### Title: timerocModule: shiny module server for time-dependent roc
> ###   analysis
> ### Aliases: timerocModule timerocModule2
> 
> ### ** Examples
> 
>   library(shiny)
>   library(DT)

Attaching package: ‘DT’

The following objects are masked from ‘package:shiny’:

    dataTableOutput, renderDataTable

>   library(data.table)
>   library(jstable)
>   library(ggplot2)
>   library(timeROC)
>   library(survIDINRI)
Loading required package: survC1
Loading required package: survival
> 
>   ui <- fluidPage(sidebarLayout(
+     sidebarPanel(timerocUI("timeroc")),
+     mainPanel(
+       plotOutput("plot_timeroc"),
+       ggplotdownUI("timeroc"),
+       DTOutput("table_timeroc")
+     )
+   ))
> 
> 
>   server <- function(input, output, session) {
+     data <- reactive({
+       dt_data <- as.data.table(pbc)
+ 
+       factor_vars <- names(dt_data)[sapply(dt_data, function(x){length(table(x))}) <= 6]
+       dt_data[, (factor_vars) := lapply(.SD, factor), .SDcols = factor_vars]
+ 
+       return(dt_data)
+     })
+ 
+     data.label <- reactive({
+       jstable::mk.lev(data())
+     })
+ 
+     out_timeroc <- callModule(
+       timerocModule,
+       "timeroc",
+       data = data,
+       data_label = data.label,
+       data_varStruct = NULL
+     )
+ 
+     observe({
+       tb <- tryCatch(out_timeroc()$tb, error = function(e) NULL)
+       print(tb)
+     })
+ 
+     output$plot_timeroc <- renderPlot({
+       {
+         print(out_timeroc()$plot)
+       }
+     })
+ 
+ 
+     output$table_timeroc <- renderDT({
+       datatable(
+         out_timeroc()$tb,
+         rownames = F,
+         editable = F,
+         extensions = "Buttons",
+         caption = "ROC results",
+         options = c(jstable::opt.tbreg("roctable"), list(scrollX = TRUE))
+       )
+     })
+ 
+ 
+   }
> 
> 
>   library(shiny)
>   library(DT)
>   library(data.table)
>   library(jstable)
>   library(ggplot2)
>   library(timeROC)
>   library(survIDINRI)
> 
>   ui <- fluidPage(sidebarLayout(
+     sidebarPanel(timerocUI("timeroc")),
+     mainPanel(
+       plotOutput("plot_timeroc"),
+       ggplotdownUI("timeroc"),
+       DTOutput("table_timeroc")
+     )
+   ))
> 
> 
>   server <- function(input, output, session) {
+     data <- reactive({
+       dt_data <- as.data.table(pbc)
+ 
+       factor_vars <- names(dt_data)[sapply(dt_data, function(x){length(table(x))}) <= 6]
+       dt_data[, (factor_vars) := lapply(.SD, factor), .SDcols = factor_vars]
+ 
+       return(dt_data)
+     })
+ 
+     data.label <- reactive({
+       jstable::mk.lev(data())
+     })
+ 
+     out_timeroc <- callModule(
+       timerocModule2,
+       "timeroc",
+       data = data,
+       data_label = data.label,
+       data_varStruct = NULL
+     )
+ 
+     observe({
+       tb <- tryCatch(out_timeroc()$tb, error = function(e) NULL)
+       print(tb)
+     })
+ 
+     output$plot_timeroc <- renderPlot({
+       {
+         print(out_timeroc()$plot)
+       }
+     })
+ 
+ 
+     output$table_timeroc <- renderDT({
+       datatable(
+         out_timeroc()$tb,
+         rownames = F,
+         editable = F,
+         extensions = "Buttons",
+         caption = "ROC results",
+         options = c(jstable::opt.tbreg("roctable"), list(scrollX = TRUE))
+       )
+     })
+ 
+ 
+   }
> 
>   shinyApp(ui, server)

Listening on http://127.0.0.1:4589


Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [4s/4s] OK
  Running ‘testthat.R’ [3s/3s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [2s/2s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR